Single-cell RNA sequencing reveals molecular and functional platelet bias of aged haematopoietic stem cells.
Aged haematopoietic stem cells (HSCs) generate more myeloid cells and fewer lymphoid cells compared with young HSCs, contributing to decreased adaptive immunity in aged individuals. However, it is not known how intrinsic changes to HSCs and shifts in the balance between biased HSC subsets each contribute to the altered lineage output. Here, by analysing HSC transcriptomes and HSC function at the single-cell level, we identify increased molecular platelet priming and functional platelet bias as the predominant age-dependent change to HSCs, including a significant increase in a previously unrecognized class of HSCs that exclusively produce platelets. Depletion of HSC platelet programming through loss of the FOG-1 transcription factor is accompanied by increased lymphoid output. Therefore, increased platelet bias may contribute to the age-associated decrease in lymphopoiesis.
GSE70657 Samples
Cell Metadata and BAM Files
Dataset MetadataBAM Files | Run Accession Number | Sample Accession Number | Organism | Organ/Tissue | Dev. Stage | Cell Type | Sequencer | Protocol | Assay Type | Library Layout | Ontology Term | Cell Cycle Phase |
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BAM Files | Run Accession Number | Sample Accession Number | Organism | Organ/Tissue | Dev. Stage | Cell Type | Sequencer | Protocol | Assay Type | Library Layout | Ontology Term | Cell Cycle Phase |
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Download BAM file for SRR2094048? |
SRR2094048 | SAMN03852482 | Mus musculus | Bone marrow | Adult | Hematopoietic stem cell | Illumina HiSeq 2000 | C1 Single-Cell mRNA Seq | RNA-Seq | Single-End | XAO:0003055 [hematopoietic stem cell] | M.G1 |
Download BAM file for SRR2094049? |
SRR2094049 | SAMN03852483 | Mus musculus | Bone marrow | Adult | Hematopoietic stem cell | Illumina HiSeq 2000 | C1 Single-Cell mRNA Seq | RNA-Seq | Single-End | XAO:0003055 [hematopoietic stem cell] | G1.S |
Download BAM file for SRR2094050? |
SRR2094050 | SAMN03852484 | Mus musculus | Bone marrow | Adult | Hematopoietic stem cell | Illumina HiSeq 2000 | C1 Single-Cell mRNA Seq | RNA-Seq | Single-End | XAO:0003055 [hematopoietic stem cell] | M.G1 |
Download BAM file for SRR2094051? |
SRR2094051 | SAMN03852485 | Mus musculus | Bone marrow | Adult | Hematopoietic stem cell | Illumina HiSeq 2000 | C1 Single-Cell mRNA Seq | RNA-Seq | Single-End | XAO:0003055 [hematopoietic stem cell] | G2.M |
Download BAM file for SRR2094052? |
SRR2094052 | SAMN03852486 | Mus musculus | Bone marrow | Adult | Hematopoietic stem cell | Illumina HiSeq 2000 | C1 Single-Cell mRNA Seq | RNA-Seq | Single-End | XAO:0003055 [hematopoietic stem cell] | G2.M |
Download BAM file for SRR2094053? |
SRR2094053 | SAMN03852487 | Mus musculus | Bone marrow | Adult | Hematopoietic stem cell | Illumina HiSeq 2000 | C1 Single-Cell mRNA Seq | RNA-Seq | Single-End | XAO:0003055 [hematopoietic stem cell] | M.G1 |
Download BAM file for SRR2094054? |
SRR2094054 | SAMN03852488 | Mus musculus | Bone marrow | Adult | Hematopoietic stem cell | Illumina HiSeq 2000 | C1 Single-Cell mRNA Seq | RNA-Seq | Single-End | XAO:0003055 [hematopoietic stem cell] | S |
Download BAM file for SRR2094055? |
SRR2094055 | SAMN03852489 | Mus musculus | Bone marrow | Adult | Hematopoietic stem cell | Illumina HiSeq 2000 | C1 Single-Cell mRNA Seq | RNA-Seq | Single-End | XAO:0003055 [hematopoietic stem cell] | M.G1 |
Download BAM file for SRR2094056? |
SRR2094056 | SAMN03852490 | Mus musculus | Bone marrow | Adult | Hematopoietic stem cell | Illumina HiSeq 2000 | C1 Single-Cell mRNA Seq | RNA-Seq | Single-End | XAO:0003055 [hematopoietic stem cell] | M.G1 |
Download BAM file for SRR2094057? |
SRR2094057 | SAMN03852491 | Mus musculus | Bone marrow | Adult | Hematopoietic stem cell | Illumina HiSeq 2000 | C1 Single-Cell mRNA Seq | RNA-Seq | Single-End | XAO:0003055 [hematopoietic stem cell] | G1.S |
FASTQC Report
Bulk DownloadFASTQC File ID | Cell Accession Number | FASTQC Report Link | No. Sequence Tags |
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SRR2094048_1 | SRR2094048 | Preview | 2224460 |
SRR2094049_1 | SRR2094049 | Preview | 5471558 |
SRR2094050_1 | SRR2094050 | Preview | 5164060 |
SRR2094051_1 | SRR2094051 | Preview | 726909 |
SRR2094052_1 | SRR2094052 | Preview | 5083214 |
SRR2094053_1 | SRR2094053 | Preview | 1645053 |
SRR2094054_1 | SRR2094054 | Preview | 5367858 |
SRR2094055_1 | SRR2094055 | Preview | 2793649 |
SRR2094056_1 | SRR2094056 | Preview | 13117 |
SRR2094057_1 | SRR2094057 | Preview | 5959617 |
Mouse Cell Data
Data Resources
Organism | Run Metadata Link | Data Repository Link | Pubmed Record Link | Author Provided Files | DAVID Annotation Chart Link | DAVID Annotation Table Link | Gene Body Coverage Matrix Link | PCA Matrix Link | Krona Plot Img Link | Unmapped Reads Link | Expression Correlation |
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