SCPortalen

SCPortalen Change Logs

2022

  • 2022-06-28 Added 5 new plots produced by SkewC QC method - The new plots are 1) Gene body coverage (GBC) for all cells 2) GBS for just cells defined as 'Typical' 3) GBS for just cells defined as 'Skewed' 4) Cell CLustering Results 5) Mean GBC. New plots were added for all datasets that uses 10x Genomics Datasets. Explore them here.

  • 2022-04-13 Added 12 more datasets utilizing 10x Genomics protocols - Now on SCPortalen there are 13 total datasets that use the 10x Genomics Chromium protocol. We have added new Human and mouse datasets from a variety of sample sources. All datasets are processed with CellRanger and are processed with the SkewC QC method. Explore them here.

  • 2022-03-02 Interactive Plotly UMAP Plots - We've added interactive UMAP plots powered by Plotly. By interacting with the legend selection (see User Guide for more details) you can alter which SkewC QC metrics are shown in the linked table below the plot.