Whole-islet RNA-sequencing analysis of human pancreas from healthy individuals and type 2 diabetes patients.
We performed whole-islet RNA-sequencing of human pancreatic islets from healthy and T2D individuals in order to compare the expression data to the corresponding single-cell RNA-sequencing data from the same donors (related single-cell study: Single-cell analysis of human pancreas and T2D, deposited at ArrayExpress under accession E-MTAB-5061).
E-MTAB-5060 Samples
Cell Metadata and BAM Files
Dataset Metadata| BAM Files | Run Accession Number | Sample Accession Number | Organism | Organ/Tissue | Dev. Stage | Cell Type | Sequencer | Protocol | Assay Type | Library Layout | Ontology Term | Cell Cycle Phase |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ERR1629982 | SAMEA4437008 | Homo sapiens | Islet of Langerhans | Adult | Whole islet | NextSeq 500 | Smart‐Seq2 | RNA-Seq | Paired-end | UBERON:0000006 [Islet of Langerhans] | S | |
| ERR1629983 | SAMEA4437009 | Homo sapiens | Islet of Langerhans | Adult | Whole islet | NextSeq 500 | Smart‐Seq2 | RNA-Seq | Paired-end | UBERON:0000006 [Islet of Langerhans] | G2.M | |
| ERR1629984 | SAMEA4437010 | Homo sapiens | Islet of Langerhans | Adult | Whole islet | NextSeq 500 | Smart‐Seq2 | RNA-Seq | Paired-end | UBERON:0000006 [Islet of Langerhans] | G1.S | |
| ERR1629985 | SAMEA4437011 | Homo sapiens | Islet of Langerhans | Adult | Whole islet | NextSeq 500 | Smart‐Seq2 | RNA-Seq | Paired-end | UBERON:0000006 [Islet of Langerhans] | M.G1 | |
| ERR1629986 | SAMEA4437012 | Homo sapiens | Islet of Langerhans | Adult | Whole islet | NextSeq 500 | Smart‐Seq2 | RNA-Seq | Paired-end | UBERON:0000006 [Islet of Langerhans] | G2 | |
| ERR1629987 | SAMEA4437013 | Homo sapiens | Islet of Langerhans | Adult | Whole islet | NextSeq 500 | Smart‐Seq2 | RNA-Seq | Paired-end | UBERON:0000006 [Islet of Langerhans] | G1.S | |
| ERR1629988 | SAMEA4437014 | Homo sapiens | Islet of Langerhans | Adult | Whole islet | NextSeq 500 | Smart‐Seq2 | RNA-Seq | Paired-end | UBERON:0000006 [Islet of Langerhans] | G2 |
FASTQC Report
Bulk Download| FASTQC File ID | Cell Accession Number | FASTQC Report Link | No. Sequence Tags |
|---|---|---|---|
| ERR1629982_1 | ERR1629982 | Preview | 28623261 |
| ERR1629982_2 | ERR1629982 | Preview | 28623261 |
| ERR1629983_1 | ERR1629983 | Preview | 33634267 |
| ERR1629983_2 | ERR1629983 | Preview | 33634267 |
| ERR1629984_1 | ERR1629984 | Preview | 31291660 |
| ERR1629984_2 | ERR1629984 | Preview | 31291660 |
| ERR1629985_1 | ERR1629985 | Preview | 39948381 |
| ERR1629985_2 | ERR1629985 | Preview | 39948381 |
| ERR1629986_1 | ERR1629986 | Preview | 38556004 |
| ERR1629986_2 | ERR1629986 | Preview | 38556004 |
| ERR1629987_1 | ERR1629987 | Preview | 7602176 |
| ERR1629987_2 | ERR1629987 | Preview | 7602176 |
| ERR1629988_1 | ERR1629988 | Preview | 28878254 |
| ERR1629988_2 | ERR1629988 | Preview | 28878254 |
Human Cell Data
