A secretagogin locus of the mammalian hypothalamus controls stress hormone release


The molecular mechanism regulating phasic corticotropin-releasing hormone (CRH) release from parvocellular neurons (PVN) remains poorly understood. Here, we find a cohort of parvocellular cells interspersed with magnocellular PVN neurons expressing secretagogin. Single-cell transcriptome analysis combined with protein interactome profiling identifies secretagogin neurons as a distinct CRH-releasing neuron population reliant on secretagogin’s Ca2+ sensor properties and protein interactions with the vesicular traffic and exocytosis release machineries to liberate this key hypothalamic releasing hormone.

GSE63093 Samples



Cell Metadata and BAM Files

Dataset Metadata

BAM Files Run Accession Number Sample Accession Number Organism Organ/Tissue Dev. Stage Cell Type Sequencer Protocol Assay Type Library Layout
SRR1645096 SRS739811 Mus musculus Brain (hypothalamic paraventricular nucleus) Juvenile secretagogin+ cell Illumina HiSeq 2000 STRT-seq (C1) RNA-seq Single
SRR1645097 SRS739812 Mus musculus Brain (hypothalamic paraventricular nucleus) Juvenile secretagogin+ cell Illumina HiSeq 2000 STRT-seq (C1) RNA-seq Single
SRR1645098 SRS739813 Mus musculus Brain (hypothalamic paraventricular nucleus) Juvenile secretagogin+ cell Illumina HiSeq 2000 STRT-seq (C1) RNA-seq Single
SRR1645099 SRS739814 Mus musculus Brain (hypothalamic paraventricular nucleus) Juvenile secretagogin+ cell Illumina HiSeq 2000 STRT-seq (C1) RNA-seq Single
SRR1645100 SRS739815 Mus musculus Brain (hypothalamic paraventricular nucleus) Juvenile secretagogin+ cell Illumina HiSeq 2000 STRT-seq (C1) RNA-seq Single
SRR1645101 SRS739816 Mus musculus Brain (hypothalamic paraventricular nucleus) Juvenile secretagogin+ cell Illumina HiSeq 2000 STRT-seq (C1) RNA-seq Single
SRR1645102 SRS739817 Mus musculus Brain (hypothalamic paraventricular nucleus) Juvenile secretagogin+ cell Illumina HiSeq 2000 STRT-seq (C1) RNA-seq Single
SRR1645103 SRS739818 Mus musculus Brain (hypothalamic paraventricular nucleus) Juvenile secretagogin+ cell Illumina HiSeq 2000 STRT-seq (C1) RNA-seq Single
SRR1645104 SRS739819 Mus musculus Brain (hypothalamic paraventricular nucleus) Juvenile secretagogin+ cell Illumina HiSeq 2000 STRT-seq (C1) RNA-seq Single

FASTQC Report

Bulk Download

FASTQC File ID Cell Accession Number FASTQC Report Link
SRR1645096 Preview
SRR1645097 Preview
SRR1645098 Preview
SRR1645099 Preview
SRR1645100 Preview
SRR1645101 Preview
SRR1645102 Preview
SRR1645103 Preview
SRR1645104 Preview

CAGE Transcription Start Site (CTSS) File Download

The CTSS positions were taken from dataset BAM files, downloadable here.






SkewC Output Plots

Skewed Coverage
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Skewed gene body coverage.
Typical Coverage
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Typical gene body coverage.
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Full gene body coverage.
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Mean gene body coverage.
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CLUST Result.
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CTL Curve.