A secretagogin locus of the mammalian hypothalamus controls stress hormone release
The molecular mechanism regulating phasic corticotropin-releasing hormone (CRH) release from parvocellular neurons (PVN) remains poorly understood. Here, we find a cohort of parvocellular cells interspersed with magnocellular PVN neurons expressing secretagogin. Single-cell transcriptome analysis combined with protein interactome profiling identifies secretagogin neurons as a distinct CRH-releasing neuron population reliant on secretagogin’s Ca2+ sensor properties and protein interactions with the vesicular traffic and exocytosis release machineries to liberate this key hypothalamic releasing hormone.
GSE63093 Samples
Cell Metadata and BAM Files
Metadata DownloadBAM Files | Run Accession Number | Sample Accession Number | Organism | Organ/Tissue | Dev. Stage | Cell Type | Sequencer | Protocol | Assay Type | Library Layout |
---|---|---|---|---|---|---|---|---|---|---|
SRR1645096 | SRS739811 | Mus musculus | Brain (hypothalamic paraventricular nucleus) | Juvenile | secretagogin+ cell | Illumina HiSeq 2000 | STRT-seq (C1) | RNA-seq | Single | |
SRR1645097 | SRS739812 | Mus musculus | Brain (hypothalamic paraventricular nucleus) | Juvenile | secretagogin+ cell | Illumina HiSeq 2000 | STRT-seq (C1) | RNA-seq | Single | |
SRR1645098 | SRS739813 | Mus musculus | Brain (hypothalamic paraventricular nucleus) | Juvenile | secretagogin+ cell | Illumina HiSeq 2000 | STRT-seq (C1) | RNA-seq | Single | |
SRR1645099 | SRS739814 | Mus musculus | Brain (hypothalamic paraventricular nucleus) | Juvenile | secretagogin+ cell | Illumina HiSeq 2000 | STRT-seq (C1) | RNA-seq | Single | |
SRR1645100 | SRS739815 | Mus musculus | Brain (hypothalamic paraventricular nucleus) | Juvenile | secretagogin+ cell | Illumina HiSeq 2000 | STRT-seq (C1) | RNA-seq | Single | |
SRR1645101 | SRS739816 | Mus musculus | Brain (hypothalamic paraventricular nucleus) | Juvenile | secretagogin+ cell | Illumina HiSeq 2000 | STRT-seq (C1) | RNA-seq | Single | |
SRR1645102 | SRS739817 | Mus musculus | Brain (hypothalamic paraventricular nucleus) | Juvenile | secretagogin+ cell | Illumina HiSeq 2000 | STRT-seq (C1) | RNA-seq | Single | |
SRR1645103 | SRS739818 | Mus musculus | Brain (hypothalamic paraventricular nucleus) | Juvenile | secretagogin+ cell | Illumina HiSeq 2000 | STRT-seq (C1) | RNA-seq | Single | |
SRR1645104 | SRS739819 | Mus musculus | Brain (hypothalamic paraventricular nucleus) | Juvenile | secretagogin+ cell | Illumina HiSeq 2000 | STRT-seq (C1) | RNA-seq | Single |
FASTQC Report
Bulk DownloadFASTQC File ID | Cell Accession Number | FASTQC Report Link | No. Sequence Tags |
---|---|---|---|
SRR1645096 | SRR1645096 | Preview | None |
SRR1645097 | SRR1645097 | Preview | None |
SRR1645098 | SRR1645098 | Preview | None |
SRR1645099 | SRR1645099 | Preview | None |
SRR1645100 | SRR1645100 | Preview | None |
SRR1645101 | SRR1645101 | Preview | None |
SRR1645102 | SRR1645102 | Preview | None |
SRR1645103 | SRR1645103 | Preview | None |
SRR1645104 | SRR1645104 | Preview | None |
CAGE Transcription Start Site (CTSS) File Download
The CTSS positions were taken from dataset BAM files, downloadable here.
UMAP Plots
SkewC Output Plots
Skewed Coverage
Skewed gene body coverage.

Typical Coverage
Typical gene body coverage.




