A secretagogin locus of the mammalian hypothalamus controls stress hormone release
The molecular mechanism regulating phasic corticotropin-releasing hormone (CRH) release from parvocellular neurons (PVN) remains poorly understood. Here, we find a cohort of parvocellular cells interspersed with magnocellular PVN neurons expressing secretagogin. Single-cell transcriptome analysis combined with protein interactome profiling identifies secretagogin neurons as a distinct CRH-releasing neuron population reliant on secretagogin’s Ca2+ sensor properties and protein interactions with the vesicular traffic and exocytosis release machineries to liberate this key hypothalamic releasing hormone.
GSE63093 Samples
Cell Metadata and BAM Files
Metadata DownloadBAM Files | Run Accession Number | Sample Accession Number | Organism | Organ/Tissue | Dev. Stage | Cell Type | Sequencer | Protocol | Assay Type | Library Layout |
---|---|---|---|---|---|---|---|---|---|---|
SRR1645096 | SRS739811 | Mus musculus | Brain (hypothalamic paraventricular nucleus) | Juvenile | secretagogin+ cell | Illumina HiSeq 2000 | STRT-seq (C1) | RNA-seq | Single | |
SRR1645097 | SRS739812 | Mus musculus | Brain (hypothalamic paraventricular nucleus) | Juvenile | secretagogin+ cell | Illumina HiSeq 2000 | STRT-seq (C1) | RNA-seq | Single | |
SRR1645098 | SRS739813 | Mus musculus | Brain (hypothalamic paraventricular nucleus) | Juvenile | secretagogin+ cell | Illumina HiSeq 2000 | STRT-seq (C1) | RNA-seq | Single | |
SRR1645099 | SRS739814 | Mus musculus | Brain (hypothalamic paraventricular nucleus) | Juvenile | secretagogin+ cell | Illumina HiSeq 2000 | STRT-seq (C1) | RNA-seq | Single | |
SRR1645100 | SRS739815 | Mus musculus | Brain (hypothalamic paraventricular nucleus) | Juvenile | secretagogin+ cell | Illumina HiSeq 2000 | STRT-seq (C1) | RNA-seq | Single | |
SRR1645101 | SRS739816 | Mus musculus | Brain (hypothalamic paraventricular nucleus) | Juvenile | secretagogin+ cell | Illumina HiSeq 2000 | STRT-seq (C1) | RNA-seq | Single | |
SRR1645102 | SRS739817 | Mus musculus | Brain (hypothalamic paraventricular nucleus) | Juvenile | secretagogin+ cell | Illumina HiSeq 2000 | STRT-seq (C1) | RNA-seq | Single | |
SRR1645103 | SRS739818 | Mus musculus | Brain (hypothalamic paraventricular nucleus) | Juvenile | secretagogin+ cell | Illumina HiSeq 2000 | STRT-seq (C1) | RNA-seq | Single | |
SRR1645104 | SRS739819 | Mus musculus | Brain (hypothalamic paraventricular nucleus) | Juvenile | secretagogin+ cell | Illumina HiSeq 2000 | STRT-seq (C1) | RNA-seq | Single |
FASTQC Report
Bulk DownloadFASTQC File ID | Cell Accession Number | FASTQC Report Link | No. Sequence Tags |
---|---|---|---|
SRR1645096 | SRR1645096 | Preview | None |
SRR1645097 | SRR1645097 | Preview | None |
SRR1645098 | SRR1645098 | Preview | None |
SRR1645099 | SRR1645099 | Preview | None |
SRR1645100 | SRR1645100 | Preview | None |
SRR1645101 | SRR1645101 | Preview | None |
SRR1645102 | SRR1645102 | Preview | None |
SRR1645103 | SRR1645103 | Preview | None |
SRR1645104 | SRR1645104 | Preview | None |
CAGE Transcription Start Site (CTSS) File Download
The CTSS positions were taken from dataset BAM files, downloadable here.