A secretagogin locus of the mammalian hypothalamus controls stress hormone release


The molecular mechanism regulating phasic corticotropin-releasing hormone (CRH) release from parvocellular neurons (PVN) remains poorly understood. Here, we find a cohort of parvocellular cells interspersed with magnocellular PVN neurons expressing secretagogin. Single-cell transcriptome analysis combined with protein interactome profiling identifies secretagogin neurons as a distinct CRH-releasing neuron population reliant on secretagogin’s Ca2+ sensor properties and protein interactions with the vesicular traffic and exocytosis release machineries to liberate this key hypothalamic releasing hormone.

GSE63093 Samples



Cell Metadata and BAM Files

Metadata Download

BAM Files Run Accession Number Sample Accession Number Organism Organ/Tissue Dev. Stage Cell Type Sequencer Protocol Assay Type Library Layout
SRR1645096 SRS739811 Mus musculus Brain (hypothalamic paraventricular nucleus) Juvenile secretagogin+ cell Illumina HiSeq 2000 STRT-seq (C1) RNA-seq Single
SRR1645097 SRS739812 Mus musculus Brain (hypothalamic paraventricular nucleus) Juvenile secretagogin+ cell Illumina HiSeq 2000 STRT-seq (C1) RNA-seq Single
SRR1645098 SRS739813 Mus musculus Brain (hypothalamic paraventricular nucleus) Juvenile secretagogin+ cell Illumina HiSeq 2000 STRT-seq (C1) RNA-seq Single
SRR1645099 SRS739814 Mus musculus Brain (hypothalamic paraventricular nucleus) Juvenile secretagogin+ cell Illumina HiSeq 2000 STRT-seq (C1) RNA-seq Single
SRR1645100 SRS739815 Mus musculus Brain (hypothalamic paraventricular nucleus) Juvenile secretagogin+ cell Illumina HiSeq 2000 STRT-seq (C1) RNA-seq Single
SRR1645101 SRS739816 Mus musculus Brain (hypothalamic paraventricular nucleus) Juvenile secretagogin+ cell Illumina HiSeq 2000 STRT-seq (C1) RNA-seq Single
SRR1645102 SRS739817 Mus musculus Brain (hypothalamic paraventricular nucleus) Juvenile secretagogin+ cell Illumina HiSeq 2000 STRT-seq (C1) RNA-seq Single
SRR1645103 SRS739818 Mus musculus Brain (hypothalamic paraventricular nucleus) Juvenile secretagogin+ cell Illumina HiSeq 2000 STRT-seq (C1) RNA-seq Single
SRR1645104 SRS739819 Mus musculus Brain (hypothalamic paraventricular nucleus) Juvenile secretagogin+ cell Illumina HiSeq 2000 STRT-seq (C1) RNA-seq Single

FASTQC Report

Bulk Download

FASTQC File ID Cell Accession Number FASTQC Report Link No. Sequence Tags
SRR1645096 SRR1645096 Preview None
SRR1645097 SRR1645097 Preview None
SRR1645098 SRR1645098 Preview None
SRR1645099 SRR1645099 Preview None
SRR1645100 SRR1645100 Preview None
SRR1645101 SRR1645101 Preview None
SRR1645102 SRR1645102 Preview None
SRR1645103 SRR1645103 Preview None
SRR1645104 SRR1645104 Preview None

CAGE Transcription Start Site (CTSS) File Download

The CTSS positions were taken from dataset BAM files, downloadable here.






UMAP Plots




SkewC Output Plots

Skewed Coverage
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Skewed gene body coverage.
Typical Coverage
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Typical gene body coverage.
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Full gene body coverage.
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Mean gene body coverage.
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CLUST Result.
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CTL Curve.