Single Cell Image Data




Fucci Cell

Metadata ID Cell Line No. of Samples No. of fastq Files No. of Cells Passing QC No. of Images Sequencer Sequencer Specifications Library Strategy Material Capture
0001 Transgenic HeLa 480 944 (472 x 2 ) 279 1640 HiSeq 2500 Paired-end 100bp scRNA-seq Human HeLa cells Fluidigm C1
Mouse Embryonic Stem Cell

Metadata ID Cell Line No. of Samples No. of Images Library Strategy Material Capture
0002 mESCs 672 2016 C1 CAGE and RNA-seq Mouse embryonic stem cells Fluidigm C1

A549 Cells

Metadata ID Cell Line No. of Samples No. of Images Sequencer Material Capture
0003 A549 1344 4032 Illumina HiSeq 2500 Adenocarcinomic human alveolar basal epithelial cells C1 Single-cell Auto Prep Integrated Fluidic Circuits (IFC)

Single Cell ATAC-seq

Metadata ID Cell Line No. of Samples No. of Images Sequencer Library Strategy Material Capture
0004 Human Hep G2 and Mouse Hepa 1-6 (Liver Cancer) 288 864 Illumina MiSeq scATAC-seq Human and mouse hepatoma cells Fluidigm C1