10x Genomics Single Cell Transcriptome Datasets


Dataset ID Dataset Title Organism Dataset Provider Sequencing Bias Cell Count
E-MTAB-10385 Single cell RNA sequencing of iPSC and Human dermal fibroblasts Homo sapiens RIKEN Center for Integrative Medical Sciences (IMS) 5' None
E-MTAB-11267 A high-resolution single-cell multiomic atlas of the human fetal lung - Organoid Homo sapiens EMBL-EBI 5' None
E-MTAB-11278 A high-resolution single-cell multiomic atlas of the human fetal lung - Organoid Homo sapiens EMBL-EBI 5' None
fixed_neurons 2k Fixed Brain Cells from an E18 Mouse Mus musculus 10X Genomics 3' 2300.0
fixed_neurons_6days 2k Fixed (for 6 days at -80ºC) Brain Cells from an E18 Mouse Mus musculus 10X Genomics 3' 2520.0
GSE121636 Single-cell sequencing of peripheral blood and tumor-infiltrating immune cells in renal clear cell carcinoma [5' RNA expression sequencing] Homo sapiens Zhang Lab, Pathology Department, The University of Iowa 5' 25672.0
GSE135663 Single-Cell Transcriptomics of Genome-Edited Kidney Organoids Homo sapiens Northwestern University 5' 74498.0
GSE135893 The single-cell transcriptomic landscape of early human diabetic nephropathy Homo sapiens Banovich lab, Integrated Cancer genomics division, Translational Genomics Research Institute 5' 114396.0
GSE143607 Single-cell transcriptome analysis revealed continuous changes in molecular phenotypes during epithelial-to-mesenchymal transition Homo sapiens RIKEN IMS 3' 8832.0
GSE153697 Single-cell profiling identifies pre-existing CD19-negative subclones in a B-ALL patient with CD19-negative relapse after CAR-T therapy Homo sapiens CIML 5' 7332.0
GSE181989 Single-cell RNA-seq of bone marrow cells from aplastic anemia patient and healthy donor Homo sapiens Institute of hematology, Zhejiang Chinese Medical University 5' None
neurons_2000 2k Brain Cells from an E18 Mouse Mus musculus 10X Genomics 3' 2440.0
neurons_900 1k Brain Nuclei from an E18 Mouse Mus musculus 10X Genomics 3' 1442.0
neuron_9k 9k Brain Cells from an E18 Mouse Mus musculus 10X Genomics 3' 11277.0
nuclei_2k 2k Brain Nuclei from an Adult Mouse (>8 weeks) Mus musculus 10X Genomics 3' 2602.0
nuclei_900 1k Brain Cells from an E18 Mouse Mus musculus 10X Genomics 3' 1729.0
pbmc4k 4k PBMCs from a Healthy Donor Homo sapiens 10X Genomics 3' 4623.0
pbmc8k 8k PBMCs from a Healthy Donor Homo sapiens 10X Genomics 3' 8708.0
t_3k 3k Pan T Cells from a Healthy Donor Mus musculus 10X Genomics 3' 3742.0
t_4k 4k Pan T Cells from a Healthy Donor Mus musculus 10X Genomics 3' 4790.0