| DRA001287 |
DRP001358 |
Single-cell analysis of lung adenocarcinoma cell lines reveals diverse expression patterns of individual cells invoked by a molecular target drug treatment. |
Homo sapiens |
Laboratory of Functional Genomics, Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo |
Lung |
SMARTer |
337 |
| DRA002399 |
DRP002435 |
Single-cell RNA-seq analysis of the cell cycle. |
Homo sapiens |
RIKEN_CLST_DGT |
HeLa cell line |
SMARTer |
472 |
| DRA002730 |
DRP002586 |
Single cell analysis of lung adenocarcinoma cell lines and the response to an anti-cancer drug stimulation. |
Homo sapiens |
Laboratory of Functional Genomics, Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo |
Lung |
SMARTer |
255 |
| E-MTAB-2512 |
ERP005640 |
Single-Cell RNA Sequencing Reveals T Helper Cells Synthesizing Steroids De Novo to Contribute to Immune Homeostasis |
Mus musculus |
EMBL-EBI |
Spleen |
SMARTer |
96 |
| E-MTAB-2600 |
ERP003293 |
Single cell mRNA -sequencing reveals cell-to-cell variation in three mouse ES cell culture conditions |
Mus musculus |
EMBL-EBI |
Embryo |
SMARTer |
869 |
| E-MTAB-2805 |
ERP006670 |
Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells |
Mus musculus |
EMBL Wellcome Trust Genome Campus |
Embryo |
Quartz-Seq |
288 |
| E-MTAB-3346 |
ERP009633 |
Single-cell transcriptome analysis reveals coordinated ectopic gene-expression patterns in medullary thymic epithelial cells. |
Mus musculus |
EMBL Heidelberg |
Thymus |
Smart‐Seq2 |
341 |
| E-MTAB-3543 |
ERP010398 |
Th2 differentiation in a time course experiment and at single generation resolution. |
Mus musculus |
EMBL-EBI |
Mediastinal Lymph Nodes |
SMARTer |
20 |
| E-MTAB-3857 |
ERP013319 |
T cell fate and clonality inference from single-cell transcriptomes. |
Mus musculus |
EMBL-EBI |
Spleen |
SMARTer |
272 |
| E-MTAB-3929 |
ERP012552 |
Single-cell RNA-seq reveal lineage formation and X-chromosome dosage compensation in human preimplantation embryos. |
Homo sapiens |
Karolinska Institutet |
Embryo |
Smart‐Seq2 |
1529 |
| E-MTAB-4026 |
ERP010821 |
Single-cell RNA sequencing of mouse embryos with Tal1 (Scl) knockout. |
Mus musculus |
EMBL-EBI: The University of Cambridge |
Embryo |
Smart‐Seq2 |
768 |
| E-MTAB-4079 |
ERP013381 |
Mouse embryonic RNA-seq. |
Mus musculus |
EMBL-EBI: The University of Cambridge |
Embryo |
Smart‐Seq2 |
1205 |
| E-MTAB-4619 |
ERP015011 |
Single CD4+ cells after Nippostrongylus brasiliensis infection. |
Mus musculus |
EMBL-EBI |
Lung, Mediastinal lymph nodes, Mesenteric lymph nodes |
C1 Single-Cell mRNA Seq |
287 |
| E-MTAB-5060 |
ERP017123 |
Whole-islet RNA-sequencing analysis of human pancreas from healthy individuals and type 2 diabetes patients. |
Homo sapiens |
Karolinska Institutet |
Islet of Langerhans |
Smart‐Seq2 |
7 |
| E-MTAB-5061 |
ERP017126 |
Single-cell RNA-seq analysis of human pancreas from healthy individuals and type 2 diabetes patients. |
Homo sapiens |
Karolinska Institutet |
Pancreas |
Smart‐Seq2 |
3514 |
| GSE29087 |
SRP006834 |
Characterization of the single-cell (ES and MEF) transcriptional landscape by highly multiplex RNA-Seq. |
Mus musculus |
Karolinska Institutet |
Embryo |
STRT |
480 |
| GSE36552 |
SRP011546 |
Initiation of a conserved trophectoderm program in human, cow and mouse embryos. |
Homo sapiens |
Peking University |
Embryo, hESC |
TruSeq |
124 |
| GSE38495 |
SRP014428 |
Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells. |
Mus musculus and Homo sapiens |
Karolinska Institutet |
Brain (Midbrain), Oocyte, Brain, Blood, Human embryonic stem cell, Prostate, Skin, Bladder, N/A |
Smart-Seq |
121 |
| GSE41265 |
SRP015959 |
Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells. |
Mus musculus |
New York Genome Center |
Bone marrow |
SMARTer |
68 |
| GSE42268 |
SRP017173 |
Quartz-Seq: a highly reproducible and sensitive single-cell RNA sequencing method, reveals non-genetic gene-expression heterogeneity. |
Mus musculus |
RIKEN |
Embryo |
Quartz-Seq |
77 |
| GSE45719 |
SRP020490 |
Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells. |
Mus musculus |
Karolinska Institutet |
Embryo, Connective tissue, Liver |
Smart-Seq |
317 |
| GSE46980 |
SRP022764 |
Quantitative single-cell RNA-seq with unique molecular identifiers. |
Mus musculus |
Karolinska Institutet |
Embryo |
STRT |
288 |
| GSE48968 |
SRP027537 |
Single-cell RNA-seq reveals dynamic paracrine control of cellular variation. |
Mus musculus |
New York Genome Center |
Bone marrow |
SMARTer |
4894 |
| GSE51254 |
SRP030617 |
Quantitative assessment of single-cell RNA-sequencing methods. |
Homo sapiens |
Stanford University |
Colon |
SMARTer |
109 |
| GSE52529 |
SRP033135 |
The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells. |
Homo sapiens |
Harvard University |
Human Skeletal Muscle |
SMARTer |
372 |
| GSE53386 |
SRP034543 |
Single-cell RNA-seq transcriptome analysis of linear and circular RNAs in mouse preimplantation embryos. |
Mus musculus and Homo sapiens |
Peking University |
Embryo, Kidney |
SUPeR-Seq |
116 |
| GSE54695 |
SRP036633 |
Validation of noise models for single-cell transcriptomics. |
Mus musculus |
Max Planck Institute of Immunobiology and Epigenetics |
Embryo |
CEL-Seq |
16 |
| GSE56638 |
SRP041119 |
Deep sequencing reveals cell-type-specific patterns of single-cell transcriptome variation. |
Mus musculus |
The University of Pennsylvania |
Heart, Brain (Hippocampus), Brain (Forebrain), Cortex |
TruSeq |
121 |
| GSE57872 |
SRP042161 |
Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma. |
Homo sapiens |
Massachusetts General Hospital |
Brain |
Smart-Seq |
875 |
| GSE59114 |
SRP044256 |
Single-cell RNA-seq reveals changes in cell cycle and differentiation programs upon aging of hematopoietic stem cells. |
Mus musculus |
Broad Institute |
Bone marrow |
SMARTer |
2128 |
| GSE59739 |
SRP044898 |
Unbiased classification of sensory neuron types by large-scale single-cell RNA sequencing. |
Mus musculus |
Karolinska Institutet |
Central nervous system (Spine) |
STRT |
2400 |
| GSE60361 |
SRP045452 |
A comparative strategy for single-nucleus and single-cell transcriptomes confirms accuracy in predicted cell-type expression from nuclear RNA. |
Mus musculus |
Karolinska Institutet |
Brain |
C1 Single-Cell mRNA Seq |
3492 |
| GSE63576 |
SRP050181 |
Somatosensory neuron types identified by high-coverage single-cell RNA-sequencing and functional heterogeneity. |
Mus musculus |
Shanghai Institute for Biological Sciences |
Central Nervous System (DRG) |
TruSeq |
209 |
| GSE64016 |
SRP050992 |
Oscope identifies oscillatory genes in unsynchronized single-cell RNA-seq experiments. |
Homo sapiens |
Morgridge Institute for Research |
Human embryonic stem cell |
SMARTer |
460 |
| GSE67310 |
SRP056585 |
Dissecting direct reprogramming from fibroblast to neuron using single-cell RNA-seq. |
Mus musculus |
Stanford University |
Connective tissue |
SMARTer |
405 |
| GSE68981 |
SRP058443 |
Single cell transcriptomics reveals unanticipated features of early hematopoietic precursors. |
Mus musculus |
Yale University |
Bone marrow |
C1 Single-Cell mRNA Seq |
519 |
| GSE69405 |
SRP059035 |
Single-cell mRNA sequencing identifies subclonal heterogeneity in anti-cancer drug responses of lung adenocarcinoma cells. |
Homo sapiens |
Samsung Medical Center: Samsung Genome Institute |
Lung |
Smart-Seq |
201 |
| GSE70151 |
SRP059775 |
Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets. |
Homo sapiens |
Harvard Medical School |
Kidney |
Drop-Seq |
192 |
| GSE70245 |
SRP059903 |
Single-cell analysis of mixed-lineage states leading to a binary cell fate choice. |
Mus musculus |
Cincinnati Childrens Hospital Medical Center |
Bone marrow |
SMARTer |
675 |
| GSE70580 |
SRP060416 |
The heterogeneity of human CD127(+) innate lymphoid cells revealed by single-cell RNA sequencing. |
Homo sapiens |
Uppsala University |
Tonsil |
Smart‐Seq2 |
648 |
| GSE70657 |
SRP060557 |
Single-cell RNA sequencing reveals molecular and functional platelet bias of aged haematopoietic stem cells. |
Mus musculus |
Weatheral Institute of Molecular Medicine |
Bone marrow |
C1 Single-Cell mRNA Seq |
135 |
| GSE70798 |
SRP060883 |
Aire controls gene expression in the thymic epithelium with ordered stochasticity. |
Mus musculus |
Harvard Medical School |
Thymus |
CEL-Seq |
310 |
| GSE71453 |
SRP061708 |
Single-cell RNA-seq reveals distinct injury responses in different types of DRG sensory neurons. |
Mus musculus |
University of California Los Angeles |
Central nervous system (DRG) |
Smart‐Seq2 |
123 |
| GSE71485 |
SRP061746 |
Single-Cell RNA-Seq with Waterfall Reveals Molecular Cascades underlying Adult Neurogenesis. |
Mus musculus |
Johns Hopkins University |
Brain (Hippocampus) |
Smart-Seq |
173 |
| GSE71585 |
SRP061902 |
Adult mouse cortical cell taxonomy revealed by single cell transcriptomics. |
Mus musculus |
Allen Institute for Brain Science |
Brain (Cortex) |
SMARTer |
1809 |
| GSE73121 |
SRP063840 |
Application of single-cell RNA sequencing in optimizing a combinatorial therapeutic strategy in metastatic renal cell carcinoma. |
Homo sapiens |
Samsung Medical Center: Samsung Genome Institute |
Kidney |
SMARTer |
121 |
| GSE73727 |
SRP064464 |
Artemisinins Target GABA A Receptor Signaling and Impair alpha Cell Identity. |
Homo sapiens |
Austrian Academy of Sciences: CeMM Research Center for Molecular Medicine |
Pancreas |
Smart‐Seq2 |
72 |
| GSE74155 |
SRP064979 |
Single-cell analyses of X Chromosome inactivation dynamics and pluripotency during differentiation. |
Mus musculus |
Karolinska Institutet |
Embryo |
Smart‐Seq2 |
617 |
| GSE74672 |
SRP065796 |
Molecular interrogation of hypothalamic organization reveals distinct dopamine neuronal subtypes. |
Mus musculus |
Karolinska Institutet |
|
|
3077 |
| GSE74833 |
SRP066311 |
Simulating multiple faceted variability in single cell RNA sequencing. |
Mus musculus |
EECS-UC Berkeley |
Lamina propria |
Smart-Seq |
768 |
| GSE75330 |
SRP066613 |
Oligodendrocyte heterogeneity in the mouse juvenile and adult central nervous system. |
Mus musculus |
Karolinska Institutet |
Brain (Hippocampus), Brain (Cortex), Brain (Corpus callosum), Brain (Hypothalamus), Brain (Striatum), Central nervous system (Dorsal horn), Brain (Midbrain), Brain (Dentate gyrus), Central nervous system (Dorsal horn, Brain (Amygdala), Central nervous system (Zona incerta) |
C1 Single-Cell mRNA Seq |
6283 |
| GSE75386 |
SRP068021 |
Single-cell RNAseq reveals cell adhesion molecule profiles in electrophysiologically defined neurons. |
Mus musculus |
Stanford University |
Brain (Hippocampus) |
SMARTer |
108 |
| GSE75413 |
SRP066675 |
Single-cell transcriptomics reveals receptor transformations during olfactory neurogenesis. |
Mus musculus |
Fred Hutchinson Cancer Research Centre |
Olfactory Epithelium |
TruSeq |
93 |
| GSE75659 |
SRP066963 |
Analysis of allelic expression patterns in clonal somatic cells by single-cell RNA-seq. |
Mus musculus and Homo sapiens |
Karolinska Institutet |
Connective tissue, Liver, Blood, Tail fibroblast |
Smart‐Seq2 |
1318 |
| GSE75748 |
SRP067036 |
Single-cell RNA-seq reveals novel regulators of human embryonic stem cell differentiation to definitive endoderm. |
Homo sapiens |
Morgridge Institute for Research |
Embryo, Skin |
C1 Single-Cell mRNA Seq |
1776 |
| GSE76381 |
SRP067844 |
Molecular Diversity of Midbrain Development in Mouse, Human, and Stem Cells. |
Mus musculus and Homo sapiens |
Karolinska Institutet |
Brain (Midbrain), Embryo, Brain |
STRT |
6665 |
| GSE77029 |
SRP068673 |
Distinct myeloid progenitor-differentiation pathways identified through single-cell RNA sequencing. |
Mus musculus |
Weatheral Institute of Molecular Medicine |
Bone Marrow |
SMARTer |
64 |
| GSE77067 |
SRP068706 |
Nuclear RNA-seq of single neurons reveals molecular signatures of activation. |
Mus musculus |
The Salk Institute for Biological Studies |
Brain |
SMARTer |
201 |
| GSE77980 |
SRP070425 |
Use of the Fluidigm C1 platform for RNA sequencing of single mouse pancreatic islet cells. |
Mus musculus |
Regeneron Pharmaceuticals Inc. |
Pancreas |
SMARTer |
622 |
| GSE78779 |
SRP070989 |
CEL-Seq2: sensitive highly-multiplexed single-cell RNA-Seq. |
Mus musculus |
Technion - Israel Institute of Technology |
Skin (ear), Bone marrow |
CEL-Seq2 |
188 |
| GSE78845 |
SRP071085 |
Visceral motor neuron diversity delineates a cellular basis for nipple- and pilo-erection muscle control. |
Mus musculus |
Karolinska Institutet |
Central Nervous System (Thoracic Ganglion) |
C1 Single-Cell mRNA Seq |
312 |
| GSE81682 |
SRP075481 |
A single-cell resolution map of mouse hematopoietic stem and progenitor cell differentiation. |
Mus musculus |
The University of Cambridge |
Bone Marrow |
Smart‐Seq2 |
3840 |
| GSE86042 |
SRP082573 |
A Distinct Gene Module for Dysfunction Uncoupled from Activation in Tumor-Infiltrating T Cells. |
Mus musculus |
Broad Institute |
Thymus |
Smart‐Seq2 |
1604 |
| PRJEB8994 |
ERP010048 |
Novel PRD-like homeodomain transcription factors and retrotransposon elements in early human development. |
Homo sapiens |
EMBL-EBI |
Embryo |
STRT |
372 |