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Single cell RNA sequencing of iPSC and Human dermal fibroblasts

single cell RNA sequencing of iPSC and Human dermal fibroblasts using 10x Genomics with 3-prime, 5-prime poly(dT) primer, and 5-prime random primer. For comparison in gene, ncRNA and enhancer detection.

CellRanger Metadata



Preview Accession Estimated No. of Cells Mean Reads per Cell Median Genes per Cell No. of Reads % Valid Barcodes % sequencing Saturation % Q30 Bases in Barcode % Q30 Bases in UMI % Reads Mapped to Genome % Reads Mapped Confidently to Genome % Reads Mapped Confidently to Intergenic Regions % Reads Mapped Confidently to Intronic Regions % Reads Mapped Confidently to Exonic Regions % Reads Mapped Confidently to Transcriptome % Reads Mapped Antisense to Gene % Fraction Reads in Cells Total Genes Detected Median UMI Counts Per Cell

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CAGE Transcription Start Site (CTSS) File Download

The CTSS positions were taken from dataset BAM files, downloadable here.



Top 10 Marker Genes per Cluster



Seurat Cluster Gene Symbol P Value Average Log Pct 1 Pct 2 Adjusted P Value
0 CEMIP 2.00E-29 2.3007305 None None 2.37E-25
0 FTH1 1.00E-18 0.5577612 None None 3.38E-15
0 COL1A1 1.15E-18 1.4030753 None None 3.39E-15
0 SPARC 6.53E-15 1.4918238 None None 1.54E-11
0 PRKG1 3.18E-12 1.5662673 None None 5.01E-09
0 RPS27 4.27E-12 0.7716561 None None 6.30E-09
0 NEAT1 1.36E-28 2.111663 None None 1.07E-24
0 THBS1 1.17E-22 2.0693831 None None 5.52E-19
0 ANTXR1 4.55E-12 1.7562289 None None 6.33E-09
0 TTC3 1.96E-11 1.3932248 None None 2.57E-08
1 CENPF 4.10E-25 2.356136 None None 9.68E-21
1 TOP2A 2.99E-17 2.3414466 None None 1.76E-13
1 HMGB2 7.79E-16 1.9235039 None None 3.68E-12
1 NAV2 7.49E-14 2.0254402 None None 1.77E-10
1 CKS2 2.30E-15 1.9009008 None None 9.06E-12
1 UBE2S 5.43E-15 1.9134791 None None 1.60E-11
1 MKI67 4.82E-18 2.1575456 None None 3.79E-14
1 CKAP2 5.16E-14 2.3908074 None None 1.35E-10
1 CENPE 4.24E-15 2.745445 None None 1.43E-11
1 TPX2 1.80E-19 2.6260684 None None 2.13E-15
2 CLDN11 0.004982201 0.6645997 None None 1
2 CUTA 0.002240774 0.68909967 None None 1
2 DIAPH3 0.003414863 0.9971286 None None 1
2 AXL 0.002156749 0.62976646 None None 1
2 TUBB 0.003637085 0.49596223 None None 1
2 PTMA 0.000626569 0.44242635 None None 1
2 SMC4 0.00504789 0.8643166 None None 1
2 HIST1H4C 0.00579036 0.8786741 None None 1
2 SRSF7 2.30E-05 1.4799207 None None 0.542544275
2 ENO1 0.000473204 0.7893623 None None 1
3 RPS15 0.00089639 0.3731087 None None 1
3 RPL6 0.000195593 0.5570654 None None 0.577487103
3 RPS20 0.001387125 0.23746553 None None 1
3 RPL29 0.002018523 0.05784972 None None 1
3 LDHA 1.03E-05 0.91371715 None None 0.066034372
3 H2AFZ 0.001167562 0.5608604 None None 1
3 ANAPC11 0.001492489 0.7867127 None None 1
3 SNU13 0.001821421 0.82758087 None None 1
3 TNFRSF12A 0.000878757 0.86440325 None None 1
3 TMSB10 7.32E-05 0.20398071 None None 0.288222917
4 TUBA1B 0.050689845 0.34031463 None None 1
4 MYL9 0.002086319 0.60000604 None None 1
4 GAPDH 0.001177554 0.48614433 None None 1
4 RBX1 0.043130714 0.69692737 None None 1
4 NDUFS5 0.0497474 0.6128034 None None 1
4 AC091607.2 0.005360972 0.72494614 None None 1
4 ITM2B 0.008320252 1.5935475 None None 1
4 EIF5A 0.003874579 0.4357625 None None 1
4 TKT 0.004393964 1.0024076 None None 1
4 C1orf56 0.008713526 1.0190152 None None 1
5 NPM1 0.028073851 0.40714017 None None 1
5 TMSB4X 0.011326543 0.1556976 None None 1
5 ITGBL1 0.036460488 1.0180476 None None 1
5 HMGA1 0.007884178 0.44364515 None None 1
5 LMNA 0.022414407 0.498914 None None 1
5 MYL12B 0.003702228 0.86807233 None None 1
5 PFN1 0.003561451 0.37215638 None None 1
5 CD63 0.000950084 0.6595956 None None 1
5 HSPA5 0.032325099 0.675277 None None 1
5 S100A4 0.005688989 0.31355095 None None 1
6 TMSB4X 0.002668458 0.12976055 None None 1
6 TUBA1B 0.028919036 0.2212155 None None 1
6 SNX3 0.009170928 0.74397933 None None 1
6 CFL1 0.00593018 0.3872019 None None 1
6 PGAM1 0.021500356 0.7908613 None None 1
6 HMGA1 0.029289849 0.3288862 None None 1
6 CD63 0.01191609 0.4406018 None None 1
6 MYL6 0.018588683 0.44376516 None None 1
6 SET 0.000540389 0.748075 None None 1
6 RPL35A 0.01275347 0.4000853 None None 1
7 RTN4 0.044369669 0.51339746 None None 1
7 CD44 0.002247035 0.7101935 None None 1
7 RAD51B 0.020605519 1.5416338 None None 1
7 TMSB10 0.008102989 0.15866816 None None 1
7 WDR70 0.062403263 1.8727341 None None 1
7 TMSB4X 0.020327339 0.13554615 None None 1
7 GAPDH 0.050233353 0.20134124 None None 1
7 YBX1 0.067235013 0.112301975 None None 1
7 AC091607.2 0.002968243 0.8921976 None None 1
7 TUBB 0.026617889 0.3496715 None None 1
8 PFN1 6.24E-05 0.36205468 None None 0.739054855
8 PCLAF 0.01993942 0.9039864 None None 1
8 RAN 0.022237058 0.57435626 None None 1
8 RPL22L1 0.030808407 0.527558 None None 1
8 GAPDH 0.010396057 0.15456669 None None 1
8 HMGB1 0.047609327 0.3755028 None None 1
8 CENPF 0.002807467 1.1529928 None None 1
8 HNRNPA1 0.005934707 0.59043 None None 1
8 CFL1 0.000571776 0.5687442 None None 1
8 TMSB4X 0.005258742 0.21452287 None None 1
9 FAU 1.08E-14 1.767281 None None 4.24E-11
9 RPS8 6.46E-14 1.2946509 None None 1.53E-10
9 HSP90AA1 2.61E-15 2.419848 None None 1.23E-11
9 RPL35 8.54E-14 1.1231418 None None 1.83E-10
9 S100A6 5.53E-14 0.6732386 None None 1.53E-10
9 TPM2 8.36E-18 2.0780723 None None 4.94E-14
9 GAPDH 2.28E-18 1.32819 None None 1.80E-14
9 RPS15 6.27E-14 1.0495137 None None 1.53E-10
9 UBA52 6.31E-14 1.4732493 None None 1.53E-10
9 LGALS1 1.87E-25 1.0958968 None None 2.21E-21
10 RPS8 0.000404948 0.52043384 None None 1
10 BRI3 0.000237681 1.1204656 None None 0.802005027
10 NEAT1 2.88E-07 1.7219261 None None 0.002712471
10 FMN2 0.000132919 1.4990671 None None 0.627909179
10 RPL34 0.002195348 0.6704881 None None 1
10 RPS15A 0.002222235 0.60136163 None None 1
10 RPL31 0.000653059 0.7905705 None None 1
10 UQCR11 0.00065639 1.2101574 None None 1
10 MAML2 0.002186452 1.16103 None None 1
10 RPS18 0.000421213 0.28091273 None None 1
11 YBX1 0.036355371 0.3601875 None None 1
11 MKI67 0.03420673 1.2037143 None None 1
11 HIST1H4C 0.012879181 1.3733392 None None 1
11 ELK3 0.017133207 2.306502 None None 1
11 RPL39 0.041249773 0.5666445 None None 1
11 CENPE 0.020655584 2.0235126 None None 1
11 RACK1 0.033423392 0.39954507 None None 1
11 HSP90B1 0.003119282 1.1760863 None None 1
11 MALAT1 0.006263411 0.6248304 None None 1
11 CKS2 0.00315089 1.4870858 None None 1
12 B2M 0.006472352 0.6678626 None None 1
12 EIF1 0.016826903 0.56017977 None None 1
12 RBFOX2 0.009125862 1.0103679 None None 1
12 CAV1 0.007990767 0.7221915 None None 1
12 RPL11 0.002631323 0.28910884 None None 1
12 EEF1G 0.000625919 0.7220431 None None 1
12 VIM 0.000162854 0.509394 None None 1
12 EEF1A1 1.58E-06 0.4981243 None None 0.037390116
12 LMNA 0.029839835 0.60161406 None None 1
12 RPL7A 0.030024351 0.2177479 None None 1
0 COL6A2 0.000760429 1.8584604 None None 1
0 CD44 0.002422424 1.3738984 None None 1
0 CTSB 0.002422424 1.7971864 None None 1
0 SRSF11 0.001944631 3.0335057 None None 1
0 COL6A3 0.001020934 1.929838 None None 1
0 COL1A2 0.003982037 1.7622784 None None 1
0 COL1A1 0.000981969 2.1962903 None None 1
0 LRP1 0.001554807 5.2556543 None None 1
0 RBMS1 0.003649673 2.442027 None None 1
0 NEAT1 0.000775663 2.5506551 None None 1
1 S100A6 0.000430276 0.87650687 None None 1
1 S100A11 1.33E-05 1.7686344 None None 0.226352165
1 LGALS1 0.000225382 1.0272721 None None 0.895779235
1 SUMO2 0.001175012 1.499574 None None 1
1 SKP1 7.35E-05 2.189403 None None 0.438250312
1 ACTB 0.001175012 0.92454416 None None 1
1 MYL6 3.40E-05 1.9144397 None None 0.270629709
1 GAPDH 1.90E-05 1.3628101 None None 0.226352165
1 ANXA5 0.001251463 1.875423 None None 1
1 ANXA2 0.000470892 2.0684686 None None 1
2 RBM8A 0.002908751 3.1713016 None None 1
2 ATP5MF 0.010343987 1.6077214 None None 1
2 LDHA 0.001105817 2.1119757 None None 1
2 PTGES3 0.002091405 1.9483125 None None 1
2 CCNB2 0.004902037 3.7596912 None None 1
2 H2AFZ 0.001418323 1.4960448 None None 1
2 COX20 0.010998535 1.6674607 None None 1
2 ACTB 0.005237783 1.0676218 None None 1
2 LSM2 0.007095712 1.9297477 None None 1
2 MGST3 0.011689628 1.7313337 None None 1
3 COL12A1 0.005123627 2.5070372 None None 1
3 COL1A2 0.004585878 2.1085958 None None 1
3 EXT1 0.001603422 2.7682295 None None 1
3 EPS8 0.004585878 3.0371473 None None 1
3 ASAP1 0.000858079 2.6687639 None None 1
3 SETD5 0.004585878 2.9723914 None None 1
3 ZNF148 0.003831031 4.074481 None None 1
3 MALAT1 0.003341019 2.9577327 None None 1
3 VCL 0.006237007 2.201548 None None 1
3 MRPL43 0.006945604 2.3442097 None None 1
4 CIAO2B 0.007849399 2.4177003 None None 1
4 TMSB10 0.00441211 0.8069286 None None 1
4 MPHOSPH6 0.006501597 3.5656965 None None 1
4 SNRPD2 0.00441211 1.9040211 None None 1
4 NDUFS7 0.003720017 2.5235271 None None 1
4 CSTB 0.003512246 2.287208 None None 1
4 MT2A 0.001185825 1.839968 None None 1
4 RNASEK 0.000919325 2.0789733 None None 1
4 CFL2 0.007642666 2.450248 None None 1
4 ATP6V1G1 0.008277955 2.6500764 None None 1
0 RPLP1 4.05E-07 0.720264 None None 0.006142343
0 EEF1A1 0.000440044 0.5638498 None None 1
0 RPL15 0.000931547 0.6145618 None None 1
0 IGF2BP1 0.001420861 1.4454883 None None 1
0 EIF3I 0.000612218 1.4963675 None None 1
0 HMGA1 4.77E-07 1.2302585 None None 0.006142343
0 LRRC75A 0.001530961 1.234718 None None 1
0 NDUFB9 0.001181238 1.166492 None None 1
0 RPS3 0.001124254 0.63017267 None None 1
0 MRPS15 0.001458537 1.4291234 None None 1
1 RPLP0 0.024444201 0.5181427 None None 1
1 TIMM8B 0.005052544 1.3891672 None None 1
1 TMSB4X 0.02194198 0.32901648 None None 1
1 ASB3 0.022661504 2.0192454 None None 1
1 RPS5 0.032934297 0.522343 None None 1
1 CLIC1 0.02194198 0.9616064 None None 1
1 RPL22 0.018690824 0.85438854 None None 1
1 NSA2 0.001525711 1.8115373 None None 1
1 SNHG29 0.011879337 0.6784967 None None 1
1 RPS10 0.017704996 0.4505289 None None 1
2 SNX6 0.002304413 1.7698308 None None 1
2 DAD1 0.002396944 1.6117021 None None 1
2 ANKLE2 0.002463726 2.5110517 None None 1
2 SEM1 0.003121888 1.2133605 None None 1
2 HSP90B1 0.001911794 1.2266268 None None 1
2 DSTN 0.005595158 1.1503288 None None 1
2 HNRNPH1 0.001315272 1.1324682 None None 1
2 PLEKHA7 0.007018782 2.1108468 None None 1
2 COX5B 0.001028751 1.4018269 None None 1
2 RPL29 0.007170043 0.6154074 None None 1
3 ACTB 9.46E-08 1.0279282 None None 0.000364351
3 HMGB1 1.15E-07 1.1127765 None None 0.000364351
3 HSPA8 1.18E-07 1.976334 None None 0.000364351
3 RPL3 1.27E-07 0.97306615 None None 0.000364351
3 SSB 1.45E-06 1.923393 None None 0.003396557
3 PTMA 3.05E-08 0.8270135 None None 0.000157187
3 HSP90AB1 1.08E-12 1.9785029 None None 2.78E-08
3 NASP 2.36E-10 2.0524647 None None 2.03E-06
3 NUCKS1 1.02E-08 1.82648 None None 6.58E-05
3 HSP90AA1 2.00E-10 1.956514 None None 2.03E-06
4 MT-CO2 1.82E-05 1.584578 None None 0.117263391
4 RPL7 2.76E-05 0.5906322 None None 0.135664439
4 MT-ND4 7.40E-05 1.5946175 None None 0.238182135
4 NDUFA4 1.60E-05 1.4173315 None None 0.117263391
4 MT-CYB 0.000141183 1.6692084 None None 0.327240812
4 RPS2 0.00015123 0.69768 None None 0.327240812
4 MT-ND1 3.69E-05 2.0462394 None None 0.135664439
4 MT-ND2 5.72E-06 1.8161187 None None 0.073628198
4 MT-CO1 3.42E-05 1.542543 None None 0.135664439
4 RPS26 2.65E-06 1.3678151 None None 0.068304662
5 EIF4G3 3.18E-09 3.1328757 None None 1.68E-05
5 CASC15 1.05E-06 2.5904443 None None 0.000748086
5 MIR924HG 4.64E-08 2.5922863 None None 0.000108669
5 ADCY2 1.62E-08 3.1041114 None None 5.94E-05
5 MACF1 9.20E-07 2.3316028 None None 0.000718399
5 MIR181A2HG 1.44E-07 3.0672567 None None 0.000185316
5 GRID2 6.89E-07 2.0988512 None None 0.000612244
5 RASAL2 7.22E-08 3.4694548 None None 0.000143083
5 LRBA 3.52E-07 2.9157941 None None 0.000362213
5 DLGAP1 5.32E-07 2.7265635 None None 0.000489143
6 NOL7 0.014466609 1.4551576 None None 1
6 ATP5F1A 0.002203355 1.3582212 None None 1
6 RPS3 0.004277704 0.4339727 None None 1
6 FAU 0.007256578 0.8782754 None None 1
6 EIF4E 0.01014137 1.4067029 None None 1
6 TMEM9 0.005535243 2.6850367 None None 1
6 SLC25A3 0.004023277 1.0829521 None None 1
6 RACK1 0.004791999 0.7422729 None None 1
6 UQCRB 0.014363121 1.289042 None None 1
6 CCT4 0.000285532 1.6198035 None None 1
7 FTH1 0.003952687 0.68742 None None 1
7 TTC19 0.005874757 2.168907 None None 1
7 GRID2 0.017771409 1.0699661 None None 1
7 NUB1 0.010778574 3.249852 None None 1
7 NME1 0.015871318 1.0720323 None None 1
7 NPM3 0.007885557 1.4913199 None None 1
7 MRPL47 0.022021547 1.6437275 None None 1
7 LRRC75A 0.013431278 1.192819 None None 1
7 OSBPL1A 0.018227082 1.5285753 None None 1
7 PVT1 0.019939039 1.2848188 None None 1
8 WSB1 0.000141944 3.7717893 None None 0.482429527
8 JUN 0.000175276 5.5042796 None None 0.482429527
8 APOE 0.000157248 1.7724996 None None 0.482429527
8 POLR2L 0.000144887 2.6614566 None None 0.482429527
8 ZFAS1 1.42E-05 3.1056645 None None 0.0916356
8 RPS15 1.41E-05 1.45888 None None 0.0916356
8 RPS19 1.03E-05 1.38743 None None 0.0916356
8 MALAT1 7.08E-06 2.0828388 None None 0.0916356
8 HIST1H3J 0.000192629 5.6218524 None None 0.482429527
8 HIST1H2AC 0.000381972 4.382353 None None 0.702855293
0 HIST1H2AJ 3.93E-54 2.8888638 None None 1.00E-49
0 HIST1H2AG 1.05E-42 2.8035052 None None 8.92E-39
0 HIST1H2AM 3.20E-37 2.6387913 None None 1.63E-33
0 HIST1H1D 2.26E-32 2.8487184 None None 7.19E-29
0 HIST1H3C 5.95E-41 2.8427973 None None 3.78E-37
0 HIST1H3B 4.99E-47 2.7446258 None None 6.35E-43
0 HIST1H2AL 1.06E-29 2.9019294 None None 2.71E-26
0 HIST1H2BM 4.52E-33 2.8128054 None None 1.64E-29
0 HIST1H2AI 3.34E-34 2.7116227 None None 1.42E-30
0 HIST1H1B 2.08E-31 2.4619374 None None 5.88E-28
1 SNRPD3 4.64E-11 1.0918338 None None 1.18E-07
1 GAPDH 5.64E-16 0.78135747 None None 7.18E-12
1 TUBA1B 1.09E-11 0.79281473 None None 3.48E-08
1 PTMA 2.00E-11 0.562818 None None 5.66E-08
1 UBE2C 1.02E-10 1.3394147 None None 2.16E-07
1 ACTG1 2.53E-12 0.76269525 None None 1.07E-08
1 EEF1A1 1.84E-12 0.57436305 None None 9.37E-09
1 ACTB 2.63E-19 0.6869471 None None 6.70E-15
1 RPS13 1.03E-12 0.7262977 None None 7.27E-09
1 TUBB 1.14E-12 0.81217587 None None 7.27E-09
2 ZYX 2.64E-06 0.70512104 None None 0.011186397
2 ACTB 8.37E-06 0.40723518 None None 0.029397361
2 CALM2 9.24E-06 0.7828234 None None 0.029397361
2 GAPDH 1.71E-05 0.5850337 None None 0.046047923
2 UBE2C 3.86E-07 1.0971023 None None 0.003277345
2 KPNA2 1.92E-05 0.79716 None None 0.046047923
2 HSPA8 4.29E-08 0.52288944 None None 0.000546235
2 DNMT3B 1.99E-05 0.5523306 None None 0.046047923
2 TOP2A 1.75E-08 1.1216843 None None 0.000446189
2 HMGN2 2.82E-05 0.7001128 None None 0.052478022
3 PVT1 8.14E-11 1.8566022 None None 2.96E-08
3 FLNA 1.42E-10 1.4897144 None None 4.83E-08
3 JMJD1C 2.07E-10 1.5939007 None None 6.84E-08
3 MACF1 2.16E-10 1.6072767 None None 6.89E-08
3 MT-CO2 3.27E-10 0.9845645 None None 9.92E-08
3 SNHG14 1.25E-11 1.09445 None None 5.31E-09
3 MALAT1 1.65E-23 1.506366 None None 7.01E-20
3 GRID2 2.94E-17 2.1342885 None None 3.61E-14
3 UNC5D 2.56E-13 1.8930224 None None 1.81E-10
3 RMRP 5.94E-20 2.1054766 None None 1.68E-16
4 HNRNPA1 0.003118224 0.5167367 None None 1
4 SMC3 0.00372746 1.041726 None None 1
4 CTNNB1 0.005386758 0.62858003 None None 1
4 NUP155 0.001437728 1.1033926 None None 1
4 HMGCS1 0.005435764 0.6347045 None None 1
4 CRABP1 0.00672446 0.67407525 None None 1
4 PRR36 0.004106651 0.8735857 None None 1
4 IPO5 0.000675894 0.6335909 None None 1
4 TUBB 0.003762571 0.34248945 None None 1
4 HSPD1 0.00021706 0.60120666 None None 1
5 RPLP0 1.59E-09 0.87732476 None None 4.05E-05
5 MDK 0.000195188 0.9229129 None None 0.471322375
5 RPL5 6.06E-07 1.0099993 None None 0.005146338
5 TPT1 1.30E-07 1.4263799 None None 0.001655086
5 YBX1 0.000157607 0.72430575 None None 0.445817211
5 RPL15 4.24E-06 0.8948814 None None 0.019523821
5 VDAC2 1.60E-05 1.1070163 None None 0.050790171
5 RPS26 4.05E-06 1.0050646 None None 0.019523821
5 RPL17 4.60E-06 1.1118059 None None 0.019523821
5 RPS8 6.94E-06 0.82107365 None None 0.025230739
6 MIR924HG 5.84E-22 4.217121 None None 2.61E-19
6 PTPRG 4.17E-25 3.9274855 None None 3.22E-22
6 CADM2 1.27E-24 4.1922774 None None 8.29E-22
6 PLEKHA5 6.33E-23 3.8839574 None None 3.22E-20
6 GULP1 2.91E-22 3.1835544 None None 1.34E-19
6 ADCY2 3.08E-23 4.3700013 None None 1.64E-20
6 PVT1 4.75E-25 3.9228249 None None 3.47E-22
6 NLGN1 2.51E-23 4.3119297 None None 1.36E-20
6 CASC15 4.41E-22 4.101135 None None 2.01E-19
6 GRID2 1.96E-27 4.1952696 None None 2.08E-24
7 HIST1H2AJ 0.00034185 1.4458189 None None 1
7 HIST1H1B 0.001072935 1.3207529 None None 1
7 SMARCC1 0.008312812 0.9677102 None None 1
7 CCT3 0.00348055 1.0306884 None None 1
7 SND1 0.005855518 1.0770248 None None 1
7 YARS 0.00332584 1.3214979 None None 1
7 VMA21 0.011168337 1.1894333 None None 1
7 NMU 0.003687215 1.6710106 None None 1
7 HIF1A 0.009997725 0.90418905 None None 1
7 LUC7L2 0.011053914 1.1560435 None None 1
8 YES1 1.18E-08 4.3395734 None None 6.01E-05
8 USO1 3.66E-07 3.5727134 None None 0.001036226
8 RPL4 9.59E-08 1.6514901 None None 0.000348819
8 BCAT1 4.89E-08 3.5688179 None None 0.000207336
8 CCNG1 2.52E-10 4.0650063 None None 1.61E-06
8 SNHG14 3.55E-11 3.8217208 None None 3.01E-07
8 PABPC1 2.61E-11 2.25894 None None 3.01E-07
8 TERF1 3.45E-12 4.0499434 None None 8.78E-08
8 RPL6 4.76E-07 1.8116066 None None 0.001102338
8 CALD1 1.27E-06 2.7833624 None None 0.002684581
0 RPL10 2.42E-18 1.0989953 None None 6.46E-14
0 RPS26 1.88E-16 1.2411939 None None 1.25E-12
0 RPL18A 5.11E-15 1.0327774 None None 2.73E-11
0 GAPDH 1.87E-14 0.7546257 None None 5.53E-11
0 RPS19 7.50E-15 1.0659727 None None 2.76E-11
0 RPLP1 1.03E-17 0.8423007 None None 1.37E-13
0 FTH1 8.27E-15 0.86753297 None None 2.76E-11
0 RPL8 7.48E-17 0.9120197 None None 6.64E-13
0 FTL 6.41E-14 0.98621386 None None 1.71E-10
0 RPS7 7.56E-15 0.9158568 None None 2.76E-11
1 AC022140.1 5.34E-23 2.7804422 None None 1.42E-19
1 KCNT2 8.08E-23 4.0657506 None None 1.82E-19
1 MIR924HG 7.69E-27 3.6320138 None None 4.10E-23
1 FRAS1 8.20E-23 3.8136663 None None 1.82E-19
1 GRID2 1.37E-28 3.493948 None None 9.11E-25
1 FTX 1.70E-22 3.6089184 None None 3.49E-19
1 RIMS2 5.57E-22 3.4311652 None None 9.28E-19
1 UNC5D 1.27E-30 3.8117654 None None 1.69E-26
1 PTPRG 6.22E-26 3.3060613 None None 2.77E-22
1 TCF12 1.21E-21 3.1837895 None None 1.89E-18
2 EIF4A1 5.84E-09 0.88796914 None None 1.42E-05
2 HSP90AA1 1.77E-10 0.9856581 None None 5.90E-07
2 LDHB 1.91E-08 0.8521418 None None 3.92E-05
2 TUBB 2.69E-08 0.7797139 None None 5.13E-05
2 HSPA8 4.05E-12 1.1492938 None None 2.16E-08
2 HSP90AB1 9.52E-23 1.1893767 None None 2.54E-18
2 NPM1 1.45E-12 0.7089202 None None 9.67E-09
2 HMGB1 6.04E-07 0.70944965 None None 0.000946959
2 ACTB 9.86E-19 0.79779106 None None 1.31E-14
2 PRDX1 5.27E-13 1.1436702 None None 4.68E-09
3 PABPC1 2.21E-05 0.9674177 None None 0.073582086
3 HSP90AA1 9.45E-06 0.86091083 None None 0.05281902
3 SUPT16H 4.02E-05 1.1132715 None None 0.106670903
3 HSPA4 1.19E-05 1.0817976 None None 0.05281902
3 HSP90AB1 8.98E-06 0.61853415 None None 0.05281902
3 HSPD1 3.79E-08 1.0093608 None None 0.000505086
3 LIN28A 1.73E-05 1.0629253 None None 0.065754159
3 CTNNB1 1.10E-05 1.5055375 None None 0.05281902
3 EIF4B 3.33E-05 1.0280406 None None 0.098690645
3 NCL 3.13E-08 1.0465728 None None 0.000505086
4 RPS23 0.000571801 0.6465919 None None 1
4 RPS12 2.08E-05 0.74028623 None None 0.554414858
4 RPL11 0.000488321 0.75674736 None None 1
4 RPS18 0.000846813 0.61250985 None None 1
4 RPL13 0.000167298 0.62849605 None None 1
4 RPS15 0.000753489 0.70404446 None None 1
4 RPL12 0.000473152 0.5503823 None None 1
4 MALAT1 0.00015707 1.0350412 None None 1
4 RPS2 0.000260454 0.6393544 None None 1
4 RPS19 4.31E-05 0.78039473 None None 0.574098172
5 ARPC2 0.008385914 1.1050403 None None 1
5 TPM4 0.009424437 1.0364544 None None 1
5 SLC25A6 0.001328288 1.1155785 None None 1
5 TP53 0.014605711 1.663046 None None 1
5 MT-ATP8 0.00263824 1.3665346 None None 1
5 PRRC2A 0.012432025 1.384239 None None 1
5 MT-CO2 0.013603182 1.0797522 None None 1
5 MT-ATP6 0.002567669 1.5243233 None None 1
5 MT-CO1 0.002582381 1.4745998 None None 1
5 RPS16 0.001724576 0.9534098 None None 1
6 CHCHD1 0.008462393 1.7140008 None None 1
6 TMSB10 0.001257784 1.1302904 None None 1
6 EIF1 0.004318958 1.029459 None None 1
6 IFITM2 0.002033845 1.3312329 None None 1
6 RNF114 0.000897795 2.3597066 None None 1
6 RPL10A 0.000545677 1.2548265 None None 1
6 TOMM6 0.000132885 1.7356614 None None 1
6 GPX4 0.000130195 1.3955941 None None 1
6 RPL18A 0.005716456 0.7801459 None None 1
6 RPS14 0.008834818 0.7727408 None None 1



SkewC Quality Control Output Plots


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Gene Body Coverage of All Cells.

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Gene Body Coverage of Typical Cells.

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Gene Body Coverage of Skewed Cells.

Select Run

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Cell CLustering Result.

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Mean Gene Body Coverage.