Single-cell RNA-seq reveals the diversity of trophoblast subtypes and patterns of differentiation in the human placenta


In this study, we isolated human villous stromal cells (STRs), CTBs, the STB, and EVTs at the first and second trimester of pregnancy and monitored the transcriptome dynamics of 1567 cells at single-cell resolution. We identified 14 subtypes of placental cells and characterized their functions, especially the unexpected secretion of 102 polypeptide hormone using bioinformatics analyses and immnunostaining verifications. Our study builds a strong foundation for understanding how the human placenta develops and functions to maintain a healthy pregnancy.

GSE89497 Samples



Cell Metadata and BAM Files



BAM Files Run Accession Number Sample Accession Number Organism Organ/Tissue Dev. Stage Cell Type Sequencer Protocol Assay Type Library Layout

FASTQC Report



FASTQC File ID Cell Accession Number FASTQC Report Link No. Sequence Tags

CAGE Transcription Start Site (CTSS) File Download

The CTSS positions were taken from dataset BAM files, downloadable here.






UMAP Plots




SkewC Output Plots

Skewed Coverage
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Skewed gene body coverage.
Typical Coverage
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Typical gene body coverage.
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Full gene body coverage.
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Mean gene body coverage.
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CLUST Result.
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CTL Curve.