1k Brain Cells from an E18 Mouse
Cells from a combined cortex, hippocampus and sub ventricular zone of an E18 mouse.
CellRanger Metadata
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| Estimated No. of Cells | Mean Reads per Cell | Median Genes per Cell | No. of Reads | % Valid Barcodes | % sequencing Saturation | % Q30 Bases in Barcode | % Q30 Bases in UMI | % Reads Mapped to Genome | % Reads Mapped Confidently to Genome | % Reads Mapped Confidently to Intergenic Regions | % Reads Mapped Confidently to Intronic Regions | % Reads Mapped Confidently to Exonic Regions | % Reads Mapped Confidently to Transcriptome | % Reads Mapped Antisense to Gene | % Fraction Reads in Cells | Total Genes Detected | Median UMI Counts Per Cell |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1729 | 28288 | 1741 | 48909315 | 98.2 | 53.4 | 97.3 | 97.7 | 94.7 | 90.5 | 2.9 | 17.5 | 70.1 | 66.9 | 1.4 | 78.2 | 16262 | 4698 |