2k Brain Cells from an E18 Mouse
Cells from a combined cortex, hippocampus and sub ventricular zone of an E18 mouse.
CellRanger Metadata
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| Estimated No. of Cells | Mean Reads per Cell | Median Genes per Cell | No. of Reads | % Valid Barcodes | % sequencing Saturation | % Q30 Bases in Barcode | % Q30 Bases in UMI | % Reads Mapped to Genome | % Reads Mapped Confidently to Genome | % Reads Mapped Confidently to Intergenic Regions | % Reads Mapped Confidently to Intronic Regions | % Reads Mapped Confidently to Exonic Regions | % Reads Mapped Confidently to Transcriptome | % Reads Mapped Antisense to Gene | % Fraction Reads in Cells | Total Genes Detected | Median UMI Counts Per Cell |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2440 | 60250 | 1636 | 147010995 | 97.0 | 81.7 | 97.8 | 97.7 | 87.5 | 81.1 | 2.8 | 17.4 | 61.0 | 57.3 | 2.1 | 74.9 | 17200 | 3465 |