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9k Brain Cells from an E18 Mouse

Cells from cortex, hippocampus and subventricular zone of an E18 mouse. (9k cells are increased to 11k from CellRanger v3.1 onwards)

CellRanger Metadata

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Preview the Web Summary produced by CellRanger here.

Estimated No. of Cells Mean Reads per Cell Median Genes per Cell No. of Reads % Valid Barcodes % sequencing Saturation % Q30 Bases in Barcode % Q30 Bases in UMI % Reads Mapped to Genome % Reads Mapped Confidently to Genome % Reads Mapped Confidently to Intergenic Regions % Reads Mapped Confidently to Intronic Regions % Reads Mapped Confidently to Exonic Regions % Reads Mapped Confidently to Transcriptome % Reads Mapped Antisense to Gene % Fraction Reads in Cells Total Genes Detected Median UMI Counts Per Cell
11277 33995 2315 383366284 98.3 65.5 98.3 98.2 95.2 92.2 2.8 21.8 67.6 64.0 1.8 86.0 20236 5585

Interactive UMAP Plot