2k Fixed Brain Cells from an E18 Mouse
Cells from a combined cortex, hippocampus and sub ventricular zone of an E18 mouse. Cells were fixed and rehydrated the same day.
CellRanger Metadata
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| Estimated No. of Cells | Mean Reads per Cell | Median Genes per Cell | No. of Reads | % Valid Barcodes | % sequencing Saturation | % Q30 Bases in Barcode | % Q30 Bases in UMI | % Reads Mapped to Genome | % Reads Mapped Confidently to Genome | % Reads Mapped Confidently to Intergenic Regions | % Reads Mapped Confidently to Intronic Regions | % Reads Mapped Confidently to Exonic Regions | % Reads Mapped Confidently to Transcriptome | % Reads Mapped Antisense to Gene | % Fraction Reads in Cells | Total Genes Detected | Median UMI Counts Per Cell |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2300 | 79313 | 1480 | 182420430 | 97.4 | 88.9 | 97.8 | 97.8 | 90.5 | 84.8 | 2.6 | 16.1 | 66.1 | 62.9 | 1.5 | 79.5 | 17026 | 2852 |