Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895627_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 539715 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 43 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 10439 | 1.9341689595434628 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 2434 | 0.4509787573070973 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA | 1302 | 0.24123843139434703 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGCAGT | 12030 | 0.0 | 86.6603 | 1 |
GTGGTAT | 12025 | 0.0 | 86.09344 | 6 |
AGTGGTA | 12040 | 0.0 | 85.986176 | 5 |
GGTATCA | 12270 | 0.0 | 85.14249 | 8 |
TGGTATC | 12240 | 0.0 | 84.69963 | 7 |
AGCAGTG | 12340 | 0.0 | 84.24825 | 2 |
CAGTGGT | 12300 | 0.0 | 84.227516 | 4 |
GTATCAA | 12465 | 0.0 | 84.10134 | 9 |
GCAGTGG | 12730 | 0.0 | 81.3255 | 3 |
CGGTCTG | 195 | 0.0 | 52.04995 | 145 |
ACGTACC | 105 | 0.007706321 | 27.618341 | 1 |
GCTATCC | 195 | 8.7464705E-6 | 26.024975 | 145 |
AGGTACA | 260 | 1.1429984E-7 | 25.095512 | 2 |
CGATAGG | 140 | 0.0 | 23.82082 | 35-39 |
TACGCAC | 110 | 0.0 | 23.726665 | 50-54 |
CGTTCAA | 190 | 2.1917315E-4 | 22.894152 | 145 |
CATGGGG | 3205 | 0.0 | 22.710808 | 25-29 |
AGGTCCG | 60 | 4.557096E-7 | 21.751863 | 120-124 |
CGATAGA | 60 | 4.558733E-7 | 21.751057 | 105-109 |
TTACGGG | 40 | 3.1054646E-4 | 21.749443 | 85-89 |