FastQCFastQC Report
Sat 18 Mar 2023
SRR6792042_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6792042_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences92905271
Sequences flagged as poor quality0
Sequence length151
%GC28

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGCGAC1417700.0141.239212
GGCTAAC2397400.0141.170062
ATAGCGA1421200.0141.169431
TATCAGC2061150.0140.187121
TCACGCA2533800.0139.92182
CAGATTC3225000.0139.738072
AGTTAGC1565850.0139.612382
ATCAGCA2061200.0139.320622
AGGCTAA2433950.0139.268161
GATAGAC1256500.0138.912481
ACCTTAC3186200.0138.696982
AGATTCG1113700.0138.67733
ACTTCGA1273750.0138.508872
ATGAATC1739450.0138.124152
ATCATTC4115550.0138.10381
CGCATAC1507750.0137.926641
AGAGATC2166950.0137.233812
TGGAACA2824850.0137.009171
GCCAAGA4239450.0136.742891
TTCACGC2612700.0136.49171
Produced by FastQC (version 0.11.5)