FastQCFastQC Report
Sat 18 Mar 2023
SRR6792040_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6792040_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences78899524
Sequences flagged as poor quality0
Sequence length151
%GC36

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGTGAT4218200.0141.627382
AGTCACT2330600.0141.4281
GTCACTA2313100.0141.407232
AACGTGA4209550.0140.962191
ATGCCTA1254150.0139.119051
ACGTATC1189400.0138.577581
TAGCGAC1197200.0138.51812
AACATCG1975300.0138.056812
ATAGCGA1212100.0137.568951
ACGCTTA1232250.0137.557722
TCACGCA1450450.0136.960112
TGGAACA3349200.0136.83521
CAATGGA3583750.0136.463611
AGTTAGC1070700.0136.131382
AGCACCT1873850.0136.119061
AGAGTCA1531000.0136.098631
TGCCTAA1272000.0135.580812
GAGTCAA1519350.0135.439122
TCACTAG739600.0135.107643
GTGGTCA2117050.0134.807752
Produced by FastQC (version 0.11.5)