FastQCFastQC Report
Sat 18 Mar 2023
SRR6792039_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6792039_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences161501236
Sequences flagged as poor quality0
Sequence length151
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGCGAC3868300.0140.660862
ATAGCGA3953250.0140.182651
ACGTATC3160000.0139.974271
ACGCTTA2826400.0138.987762
ATGCCTA2070550.0137.987381
ACGTGAT3817350.0137.84662
TATCAGC2696800.0137.494381
CAAGCTA3151850.0136.944472
AACGTGA3856500.0136.243971
CGCATAC2582850.0136.08461
AGTTAGC2346000.0136.044452
AGTCACT1897600.0135.894991
GTCACTA1865750.0135.627982
ATCAGCA2656000.0135.278212
GGCTAAC2333750.0135.122762
AACATCG3158200.0134.83182
GCATACA2553200.0134.126142
GATAGAC2008100.0133.384221
CAGATTC2476950.0133.182222
GACTAGT2566900.0132.79781