SRR3127982.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3127982.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1719261
Sequences flagged as poor quality	0
Sequence length	100
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	66973	3.8954527555734706	No Hit
CGCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCT	6080	0.35364031406517105	No Hit
CGTTCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTT	6067	0.3528841752357553	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCT	5401	0.3141466013595376	No Hit
CCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTG	3889	0.2262018390459622	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2617	0.1522165628139067	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTC	2604	0.151460423984491	No Hit
CTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTGC	2425	0.14104897394869076	No Hit
CGTCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTC	2272	0.1321498015717218	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	18900	90.430824	1
AGGGATG	2635	74.7272	5
ATAGGGC	1080	73.5374	3
AGGGAAT	2070	72.64822	5
ATAGGGA	1570	71.539116	3
TAGGGCA	770	70.18631	4
GTAGGGA	1275	69.662155	3
AGATAGG	970	68.86991	1
GAATAGG	875	68.82002	1
AGAGGGC	2535	68.40593	3
GTACGGG	285	67.60586	2
AGTAGGG	2725	67.60283	2
AGGGACT	1845	67.49861	5
GAGGGAT	1885	67.312805	4
GGTAAGG	975	67.06919	1
TAGGGAT	1095	66.950806	4
TATAGGG	1305	66.260185	2
TAAGAGG	1165	66.22635	1
ACGGGTA	200	65.79204	4
TAGAGGG	2925	65.39038	2