SRR3127936.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3127936.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2051570
Sequences flagged as poor quality	0
Sequence length	100
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	94840	4.622801074299195	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCT	7333	0.35743357526187264	No Hit
CGTTCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTT	7278	0.3547527015895144	No Hit
CGCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCT	5579	0.2719380766924843	RNA PCR Primer, Index 16 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTG	3593	0.1751341655415121	RNA PCR Primer, Index 16 (95% over 24bp)
CGTTTTCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTC	3557	0.17337941186505945	No Hit
CGTCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTC	2665	0.12990051521517668	RNA PCR Primer, Index 16 (95% over 22bp)
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2394	0.11669111948410242	No Hit
CTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTGC	2144	0.10450533006429222	RNA PCR Primer, Index 16 (96% over 25bp)
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2122	0.10343298059534893	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	24765	90.60114	1
ACGGGTA	225	75.20035	4
ATAGGGC	1295	73.67602	3
TAGGGCA	890	72.87675	4
GAATAGG	1295	72.29828	1
TAGACGG	295	71.768715	1
AGGGATG	2510	71.71747	5
AGTAGGG	2875	69.80724	2
AGGGTAC	890	69.70819	5
GTACGGG	425	69.672615	2
ATAGAGG	1500	69.004295	1
ATAGCGG	475	68.34397	1
TATAGGG	1700	68.29022	2
TAGAGGG	3790	68.20779	2
GTTTTTT	33295	67.46344	2
ATAGGGA	1765	67.371414	3
GAGGGAT	2055	67.24119	4
TAGGGTC	695	66.27369	4
AGAGGGC	2920	66.15442	3
AGTAAGG	1195	66.143326	1