SRR3127899.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3127899.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1107555
Sequences flagged as poor quality	0
Sequence length	100
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10481	0.9463186929768724	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	5114	0.4617377918026644	No Hit
GCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTG	4713	0.425531914893617	No Hit
CTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGC	4432	0.4001607143663295	No Hit
CCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTG	4207	0.37984569615052977	No Hit
AGCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCT	1727	0.15592905092749343	No Hit
AAAGCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTT	1556	0.14048963708348572	No Hit
TAGACCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCT	1367	0.12342502178221398	No Hit
CGCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCT	1257	0.11349323509893415	No Hit
AGAGCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTT	1239	0.11186803364167017	No Hit
GGCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCT	1209	0.10915936454623022	No Hit
TCCGCTACGACCAACTCATACACCTGTCTCTTATACACATCTGACGCTTG	1182	0.10672156236033424	No Hit
ACTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTG	1175	0.10608953957139827	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAT	130	0.0	90.37941	5
ACGGGTA	160	0.0	88.11992	4
CGTTTTT	3165	0.0	86.06157	1
AGTACGG	185	0.0	83.91634	1
AGGGATG	2775	0.0	83.32492	5
GGCCGAT	125	0.0	82.71523	7
CGCTACG	815	0.0	82.4615	3
GCTACGA	815	0.0	82.4615	4
ATAGCGG	195	0.0	82.02546	1
CGTAGGG	350	0.0	81.93176	2
AGGGTAC	460	0.0	81.73442	5
TATCGGG	110	0.0	81.199135	2
CGAAGGG	945	0.0	80.091156	2
GCGTAGG	185	0.0	78.830505	1
AGGGAAT	2355	0.0	78.82773	5
AGGGTAT	890	0.0	78.680855	5
GCGGGAT	550	0.0	78.61365	4
CTACGAC	855	0.0	78.60365	5
TAGAGGG	1800	0.0	78.350044	2
GATCGGT	30	1.4566049E-6	78.32882	8