SRR3127184.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3127184.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	615931
Sequences flagged as poor quality	0
Sequence length	100
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7679	1.2467305591048348	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	2870	0.4659612846244141	No Hit
GCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCTG	2554	0.4146568365612382	No Hit
CCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCTG	2143	0.3479285829094493	No Hit
CTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCTGC	2088	0.33899901125288384	No Hit
AAAGCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTT	1133	0.18394917612524778	No Hit
GGTACTGAACCTACGAGTACACCGACTACGGCGGACTAATCTTCAACTCC	986	0.16008286642497294	No Hit
CGCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCT	819	0.13296943975867426	No Hit
AGCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCT	740	0.12014332774288028	No Hit
GGCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCT	674	0.10942784175500178	No Hit
AAAGCGGCTGTGCAGACACTGTCTCTTATACACATCTGACGCGGCAGACT	646	0.10488187800256846	No Hit

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	2415	0.0	86.6863	1
CGTAGGG	115	0.0	86.08656	2
ATAGCGG	110	0.0	85.72786	1
AGGGCAT	645	0.0	85.24381	5
GACGGGT	45	2.7284841E-11	83.80232	3
TAGCGGG	255	0.0	83.1929	2
AACGGGC	160	0.0	79.54672	3
TCCGCTA	560	0.0	79.14518	1
TCGAGGG	275	0.0	78.85678	2
GGATGAC	645	0.0	78.68659	7
GGTTAGC	30	1.456554E-6	78.32231	7
GCTACGA	560	0.0	78.28409	4
AGGGATG	1530	0.0	77.40086	5
CGCTACG	570	0.0	76.910675	3
GGATGGC	1075	0.0	76.500854	7
GATGACC	640	0.0	76.36424	8
AAGGGCA	830	0.0	76.103615	4
TAACGGG	155	0.0	76.03652	2
ATAGGGA	735	0.0	75.67862	3
TAAGGGA	630	0.0	75.57173	3