SRR3127161.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3127161.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1579769
Sequences flagged as poor quality	0
Sequence length	100
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14958	0.9468472922306995	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	9174	0.5807178138069553	No Hit
GCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCTTCTG	3887	0.24604863116063172	Illumina PCR Primer Index 8 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCTTCTG	3246	0.20547307865896852	Illumina PCR Primer Index 8 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCTTCTGC	2879	0.18224183409093353	Illumina PCR Primer Index 8 (95% over 23bp)
GGTACTGAACCTACGAGTACACCGACTACGGCGGACTAATCTTCAACTCC	2040	0.12913280359343676	No Hit
AAAGCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCTT	1987	0.12577788271576415	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	5010	86.23924	1
CGCTACG	1590	83.65251	3
TCCGCTA	1620	83.29023	1
ATAGCGG	255	82.965866	1
ACGGGAT	855	82.45458	4
AGGGATG	5490	81.071335	5
CGGGTAT	280	80.56991	5
CGGGAAT	735	80.56991	5
GCTACGA	1650	80.32576	4
CGTAGGG	570	79.97842	2
CTACGAC	1685	79.215126	5
ACGACCA	1655	78.38167	7
AAGGGAT	5385	78.288216	4
AACGGGA	985	77.775185	3
CGACCAA	1670	77.677635	8
GGATGGC	3530	77.62422	7
TACGACC	1715	77.55539	6
GAGGGAT	3360	77.21283	4
GTACGGG	355	76.78486	2
TAAGGGA	2560	76.189964	3