SRR3126988.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126988.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	888230
Sequences flagged as poor quality	0
Sequence length	100
%GC	44

Per base quality graph

Per base quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9320	1.0492777771523143	No Hit
GCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTG	3266	0.3676975558132466	TruSeq Adapter, Index 13 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTG	2746	0.30915416052148653	TruSeq Adapter, Index 13 (95% over 22bp)
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	2538	0.2857368024047825	No Hit
CTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGC	2518	0.28348513335509945	TruSeq Adapter, Index 8 (95% over 23bp)
AGCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCT	1175	0.1322855566688808	TruSeq Adapter, Index 8 (95% over 21bp)
AAAGCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTT	1152	0.12969613726174525	No Hit
GGCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCT	1104	0.12429213154250589	TruSeq Adapter, Index 13 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCT	989	0.11134503450682819	TruSeq Adapter, Index 8 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	3020	86.93202	1
TAGGGCG	145	84.26916	4
ACGGGTA	140	80.565	4
TAGACGG	165	79.84112	1
AGGGATG	1720	78.96464	5
AGGGCAT	850	77.4056	5
TAGGGTC	180	75.71619	4
TAAGGGA	800	74.60656	3
CGCTACG	505	73.51889	3
AGACGGG	570	73.40491	2
ACGCGGG	180	73.12998	2
GACGGGT	135	73.105286	3
AGAGGGT	715	72.95923	3
GTAAGGG	1275	72.63836	2
GGTAAGG	545	72.516235	1
GCGGGAT	260	72.301926	4
GTAAAGG	430	72.215096	1
TCCGCTA	515	72.1726	1
AGCGGGT	275	71.7761	3
AGGGAAT	1450	71.62878	5