SRR3126967.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126967.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2693336
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	68374	2.538636100360297	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTT	6766	0.25121262256175986	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCT	6048	0.2245542331146207	No Hit
CGCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCT	5061	0.18790822979383187	TruSeq Adapter, Index 15 (95% over 21bp)
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	4169	0.15478945070351416	No Hit
CCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCTG	3650	0.13551966780230912	No Hit
CTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCTGC	2899	0.10763603204353263	TruSeq Adapter, Index 15 (95% over 23bp)
CGTTTTCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTC	2716	0.10084148431536208	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	21745	89.483315	1
ATAGGGC	1585	75.01854	3
AGTAGGG	4220	71.08915	2
ATAGGGA	2300	69.67932	3
AGGGATG	3915	69.26621	5
ATAACGG	260	68.77589	1
TATAGGG	1910	68.68564	2
GAATAGG	1565	68.55616	1
ACGGGTA	285	67.61084	4
GTAGGGA	1895	67.45855	3
AGAGGGC	3855	67.41835	3
CGTAGGG	830	67.41615	2
ACGGGAT	685	67.2377	4
TAGGGAT	1585	67.01261	4
TAGGGCA	1285	66.930695	4
AGATAGG	1445	66.43367	1
AAGAGGG	9325	66.40978	2
ATAGAGG	1725	66.01646	1
TAACGGG	875	65.561195	2
AGGGTAC	1020	64.96752	5