SRR3126849.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126849.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2471077
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	18288	0.7400821585082132	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA	4722	0.1910907673051062	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	4639	0.18773190798991696	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	4576	0.18518241236513472	No Hit
GCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTCTG	3182	0.12876976314376282	TruSeq Adapter, Index 14 (95% over 24bp)
CTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTCTGC	2842	0.11501058040684284	Illumina PCR Primer Index 3 (95% over 23bp)
GGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGGCATTGGTAT	2742	0.11096376195480755	No Hit
CCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTCTG	2696	0.10910222546687133	TruSeq Adapter, Index 14 (95% over 24bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	6515	82.71848	1
CGTAGGG	560	79.776985	2
ATAGCGG	505	79.22077	1
AGGGTAC	1040	77.27225	5
AAGGGTA	1800	76.499016	4
ATAGGGC	1510	76.25176	3
AGGGTAT	1465	74.74446	5
ACGGGAT	710	74.134514	4
AGGGATG	3000	73.15708	5
AGGGCAT	2255	73.15118	5
TAGGGTA	845	72.30151	4
GAGGGTA	1250	72.18583	4
CGAAGGG	2430	72.1846	2
TAGGGCA	1375	71.77568	4
GAATAGG	1545	71.58976	1
AGTAGGG	4430	70.59273	2
GTAGGGT	955	70.37095	3
AGGGCAC	1630	70.349815	5
AGTAAGG	1315	70.15229	1
TAAGGGA	2120	69.82893	3