SRR3126744.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126744.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2533763
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15704	0.6197896172609672	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	5802	0.22898747830795538	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA	3944	0.155657810142464	No Hit
GCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCTG	3102	0.12242660422462559	Illumina PCR Primer Index 2 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCTG	2808	0.110823309046663	RNA PCR Primer, Index 10 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCTGC	2763	0.1090472944786075	TruSeq Adapter, Index 10 (95% over 23bp)
GGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAATGGACGGG	2610	0.10300884494721882	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	6210	81.929825	1
CGTAGGG	745	76.38098	2
GTAGGGC	1255	74.14573	3
AGAGGGC	3520	73.16486	3
ATAGCGG	530	72.8192	1
CGAAGGG	2390	72.41125	2
AGGGCAT	2475	71.58645	5
AGTACGG	250	71.54042	1
AGTAAGG	1670	70.45818	1
TAGGGCA	1435	70.085236	4
TACGGGT	175	69.823235	3
TAAGGGA	1915	69.69702	3
TATAGGG	2125	69.49072	2
ATAGGGC	1475	69.45909	3
ACGGGAT	575	68.655624	4
GTAAGGG	3890	68.54718	2
AGTAGGG	4045	68.245766	2
AGGGATG	2845	67.892876	5
AGGGACT	4315	67.5267	5
GTACGGG	440	67.335495	2