FastQCFastQC Report
Sat 31 Dec 2022
SRR1954863.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954863.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475775
Sequences flagged as poor quality0
Sequence length51
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT54711.149913299353686No Hit
GAATCTATCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTC15550.32683516368031107No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCG9030.18979559665808418No Hit
CGTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5500.1156008617518785No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGC5130.10782407650675213No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)