FastQCFastQC Report
Sat 31 Dec 2022
SRR1954813.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954813.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences239489
Sequences flagged as poor quality0
Sequence length51
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT18070.754523172254258No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5150.21504119187102538No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC3720.1553307250019834No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3700.15449561357724154No Hit
CTGTCTATTATACACATCTGACGCGCCATCAATCGTATGCCGTCTTCTGCT3120.13027738225972801No Hit
CCTGTCACTTATACACATCTGACGCGCCATCAATCGTATGCCGTCTTCTGC2970.12401404657416416No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)