FastQCFastQC Report
Sat 31 Dec 2022
SRR1954783.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954783.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences180684
Sequences flagged as poor quality0
Sequence length51
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT18401.0183524827876294No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5600.3099333643266698No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3700.20477740143012108No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC2250.12452679816696553No Hit
CTGTCTATTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGCT1810.10017489096987005No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)