FastQCFastQC Report
Sat 31 Dec 2022
SRR1954761.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954761.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences159625
Sequences flagged as poor quality0
Sequence length51
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT17081.0700078308535632No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCG11220.7028974158183242No Hit
GAATCTATCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTC9810.6145653876272514No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGC9130.5719655442443227No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4990.3126076742364918No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCG3480.21801096319498825No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGC3050.19107282693813624No Hit
GAATGAACTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTC3000.18794048551292092No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTC2860.17916992952231794No Hit
GAATGAATGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCT2510.1572435395458105No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2290.14346123727486296No Hit
GAACTGACTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCT2230.13970242756460455No Hit
GCTGTCACTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGC2090.13093187157400157No Hit
GAATGAAACGGCGACTGTCTCTTATACACATCTGACGCCTTGTCGATCGTA1860.11652310101801097No Hit
CGTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1660.10399373531714956No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)