FastQCFastQC Report
Sat 31 Dec 2022
SRR1954741.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954741.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences386120
Sequences flagged as poor quality0
Sequence length51
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT23730.6145757795503988No Hit
GAATCTATCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTC15690.406350357401844No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCG11050.2861804620325288No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGC9990.25872785662488346No Hit
GCTGTCACTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTCTGC5430.14062985600331504No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA4980.1289754480472392No Hit
CTGTCTATTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTCTGCT4840.12534963223868228No Hit
GAACTGACTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTCT4220.10929244794364447No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)