FastQCFastQC Report
Sat 31 Dec 2022
SRR1954723.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954723.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences159045
Sequences flagged as poor quality0
Sequence length51
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT18271.148731491087428No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5340.3357540318777704No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA4200.2640762048476846No Hit
GAATCTATCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTC2180.137068125373322No Hit
CTGTCTATTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTCTGCT2100.1320381024238423No Hit
CCTGTCACTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTCTGC2040.12826558521173254No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC1810.11380426923197837No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1700.10688798767644378No Hit
AGTTTTATGTTTTTTAAACTATTTTCCTTAAAGCTGAAGAAAAAATGACAA1610.10122921185827911No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)