FastQCFastQC Report
Sat 31 Dec 2022
SRR1954543.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954543.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences566551
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT64231.133701996819351No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCG18690.3298908659591105No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGC12900.22769353509216295No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC12870.2271640152431114No Hit
TGAATGATACCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCC12560.22169231013624544No Hit
GAATCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTC11680.20615972789740025No Hit
GAATGATACGGCGACCACCGATGAATGATACGGCGAGCACCGGTCGAATGC8970.158326434866411No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)