FastQCFastQC Report
Sat 31 Dec 2022
SRR1954482.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954482.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences197873
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT23421.1835874525579537No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCG6540.33051502731550036No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC5210.26330019760149187No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGC4220.21326810631061335No Hit
GAATCTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCGTCTTC3760.1900208719734375No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)