FastQCFastQC Report
Sat 31 Dec 2022
SRR1954419.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954419.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences372813
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT40931.0978694412480252No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGTCTGAATCGTATGCCG31950.8569980124083656No Hit
GAATCTGTCTCTTATACACATCTGACGCCGTCTGAATCGTATGCCGTCTTC26180.7022287312942413No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGTCTGAATCGTATGC18420.49408148321008116No Hit
GGGCTTAACTTTCTCATGAATTTGCCTGAGGTTTCCAAACCCTTCACATTT10780.28915300700351115No Hit
GAACTGTCTCTTATACACATCTGACGCCGTCTGAATCGTATGCCGTCTTCT8230.22075410460472142No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCGTCTGAATCGTATGCCGTC5670.1520869712161325No Hit
GAATGACTGTCTCTTATACACATCTGACGCCGTCTGAATCGTATGCCGTCT5340.1432353485527597No Hit
GCTGTCTCTTATACACATCTGACGCCGTCTGAATCGTATGCCGTCTTCTGC4350.11668048056264133No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC4170.11185232274625617No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)