FastQCFastQC Report
Sat 31 Dec 2022
SRR1953740.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953740.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1088767
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT39600.36371418310804793No Hit
GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT36690.33698670147056253No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT31210.2866545367374287No Hit
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT27180.24964018931506923No Hit
GGGCAAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT24770.2275050584744027No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC19210.17643811761377778No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT18720.17193761383289538No Hit
AGTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT16300.14971063597629244No Hit
GTGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT15710.1442916620360463No Hit
GGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG15000.1377705239045636No Hit
GGGCATGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT14810.13602543060177247No Hit
GTGCAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG14170.1301472215818444No Hit
AAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT12470.11453322887266053No Hit
GGAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT12170.11177781839456927No Hit
GGGCAGGGGCTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC11510.10571591534276846No Hit
GGGGTAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT11470.10534852727902297No Hit
AGAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT11060.10158279962563158No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)