FastQCFastQC Report
Sat 31 Dec 2022
SRR1953716.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953716.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2109104
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT83410.3954759935972811No Hit
GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT31450.14911545376614904No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT29580.1402491294881618No Hit
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT23760.11265447317913199No Hit
GGGCAAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT22610.1072019208156639No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)