FastQCFastQC Report
Sat 31 Dec 2022
SRR1953700.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953700.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1692205
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT90330.533800573807547No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT47000.277744126745873No Hit
GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT37700.22278624634722152No Hit
GGGCAAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT33130.19578006210831428No Hit
GAGAGTTGTTTTAGTGCACCACTTAAGAATAGATTTGAAATGATTTCACAT30340.17929269798871886No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29600.17491970535484766No Hit
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT26930.15914147517587998No Hit
GGGCATGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT19850.1173025726788421No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)