FastQCFastQC Report
Sat 31 Dec 2022
SRR1953493.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953493.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1660804
Sequences flagged as poor quality0
Sequence length86
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA43650.2628245115016582No Hit
GAGCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTC32130.19346051671359174No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT30350.18274281613001897No Hit
GAGAGCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCT26190.15769470690099494No Hit
AAGCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTC23280.1401730728008844No Hit
AAGAGCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCT19350.11650983499558046No Hit
GCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTG19320.11632919959248653No Hit
TAGAGCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCT18030.10856187725944784No Hit
CTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGC17460.10512980460066329No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)