FastQCFastQC Report
Sat 31 Dec 2022
SRR1953486.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953486.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1646508
Sequences flagged as poor quality0
Sequence length86
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA42710.2593974642091019No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT40850.2481008291487196No Hit
GAGAGCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCT22580.13713872024915763No Hit
GAGCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTC21040.12778559229593783No Hit
AAGAGCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCT17330.10525305677227198No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)