Basic Statistics
Measure | Value |
---|---|
Filename | SRR7868828_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 13784855 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 194015 | 1.407450422946052 | No Hit |
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGG | 43040 | 0.3122267154786902 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 39265 | 0.2848415888306406 | No Hit |
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCC | 35644 | 0.2585736302630677 | No Hit |
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGC | 32482 | 0.23563541292237022 | No Hit |
CCAACCTCCTACTCCTCATTGTACCCATTCTAATCGCAATGGC | 21934 | 0.15911665374789943 | No Hit |
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCACTCA | 19978 | 0.144927168258208 | No Hit |
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGC | 18803 | 0.1364033208909343 | No Hit |
TGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCATA | 17743 | 0.12871372241492565 | No Hit |
ACTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTC | 17637 | 0.1279447625673248 | No Hit |
CCTCCTACTCCTCATTGTACCCATTCTAATCGCAATGGCATTC | 15662 | 0.11361744465212002 | No Hit |
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATA | 15481 | 0.11230440944065062 | No Hit |
CTCCTACTCCTCATTGTACCCATTCTAATCGCAATGGCATTCC | 14312 | 0.10382408810248639 | No Hit |
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGT | 13844 | 0.10042905783194674 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCAAAA | 3390 | 0.0 | 24.346203 | 1 |
CGGTGGC | 8840 | 0.0 | 21.101065 | 1 |
AGCGCAA | 3595 | 0.0 | 18.579208 | 4 |
ACTAAAT | 4580 | 0.0 | 17.697206 | 1 |
CGACCGT | 1905 | 0.0 | 17.485321 | 1 |
TAAATAC | 8605 | 0.0 | 16.879444 | 2 |
CAGCGCA | 4095 | 0.0 | 16.762503 | 3 |
CTAAATA | 8805 | 0.0 | 16.330057 | 1 |
CGCAAGT | 4150 | 0.0 | 16.22915 | 6 |
TGCAGCG | 4265 | 0.0 | 16.097221 | 1 |
CCGTCAT | 5100 | 0.0 | 16.037924 | 1 |
GACCGTT | 2075 | 0.0 | 15.961521 | 2 |
TTAACCC | 5080 | 0.0 | 15.914481 | 8 |
ACTACCG | 9245 | 0.0 | 15.788415 | 7 |
TACCGTA | 9225 | 0.0 | 15.722945 | 9 |
ACCGTTG | 2110 | 0.0 | 15.696017 | 3 |
CTACCGT | 9230 | 0.0 | 15.673999 | 8 |
CCGTATG | 9290 | 0.0 | 15.473478 | 11 |
CGTATGG | 9290 | 0.0 | 15.472918 | 12 |
TAACCCC | 5270 | 0.0 | 15.200626 | 9 |