SRR6503023_2.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR6503023_2.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	86895336
Sequences flagged as poor quality	0
Sequence length	150
%GC	36

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA	4032901	4.641101796303544	No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC	883883	1.0171811752934588	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	833044	0.9586751583537233	No Hit
AGATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA	507402	0.583923169363198	No Hit
CCATCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG	479198	0.5514657311411972	No Hit
CCATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTA	187544	0.21582746397344044	Illumina Single End PCR Primer 1 (100% over 21bp)
GTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC	148464	0.17085381889771392	No Hit
CCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATAC	140214	0.1613596384505608	No Hit
CCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGA	138099	0.1589256758268361	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ATAGCGA	145415	143.7256	1
TATCAGC	238440	143.67606	1
GATAGAC	171925	143.64511	1
TTCACGC	225430	141.87982	1
ATGAATC	205170	141.70732	2
ATCCGTC	251700	141.61024	2
TAGCGAC	147910	141.60156	2
TGGAACA	286735	141.30643	1
TCACGCA	226430	141.05795	2
TAAGGTC	219895	140.97478	2
ATCAGCA	243275	140.74155	2
ATAGACA	175895	140.72969	2
CCTAATC	175510	140.34113	1
ACCTTAC	224240	139.89958	2
GTACGCA	98625	139.6455	1
CTAAGGT	223190	139.42805	1
AGCACCT	112155	139.38869	1
AACTCAC	178260	139.26855	1
GGCTAAC	147315	139.18793	2
GCTAACT	75385	139.1832	3