FastQCFastQC Report
Mon 20 Mar 2023
SRR6503012_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6503012_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91663763
Sequences flagged as poor quality0
Sequence length150
%GC35

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG1080960311.79266773064946No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGAAAAAAAAAAAAAAAAAAA18954842.0678662297553725No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA8781540.9580165282981019No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGGAAAAAAAAAAAAAAAAAA8626990.9411559942176931No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGAAAAAAAAAAAAAAAAAAAA6353580.6931397743293607No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA3372200.3678880169909673No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGCAAAAAAAAAAAAAAAAAA1616770.17638049618364457No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGAAAAAAAAAAAAAAAAA1541260.16814278069731875No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGAGAAAAAAAAAAAAAAAAAA1521000.1659325288663962No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGGGAGTTGAGTGCTGAAAAA1413080.15415906501678311No Hit
AGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGA1300940.14192522294769855No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGGGAAAAAAAAAAAAAAAAA1213880.13242746754789023No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGCTAAACCTAGCCCCAAACC1146240.12504832471256935No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGAGCACACGTCTGAACTC1117320.12189331568244693Illumina Multiplexing PCR Primer 2.01 (100% over 22bp)
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGAAAAAAAAAAAAAAAAA1053980.11498327861578189No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGTAGAATCTTAGTTCAACTTT1009650.11014712542403479No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGCAAAAAAAAAAAAAAAAAAA971380.10597208408299799No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGAGAAAAAAAAAAAAAAAAAAA960810.10481895664702309No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAGCAGT105297550.096.9353561
AGCAGTG106934750.095.3353352
AGTGGTA107124050.095.186125
GTATCAA107265900.095.062959
GGTATCA108152700.094.174318
CAGTGGT108380550.094.043784
TGGTATC108959050.093.4662867
GCAGTGG109039950.093.4378743
GTGGTAT109133450.093.426396
GGTATAA524750.031.3364668
GCAGTTG466750.030.1728743
TGGTATA547250.030.1399387
AGCAGTT527750.026.8560752
CAGTTGT534200.026.4027254
CATGGGG25255950.026.14474125-29
ATGGGGT6576800.026.03650525-29
ATGGGGG7494900.025.65975625-29
ATGGGGA8778000.025.00149225-29
ATGGGGC3508600.024.12233425-29
TGGGGAA4790350.024.04654525-29