Basic Statistics
Measure | Value |
---|---|
Filename | SRR6503012_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 91663763 |
Sequences flagged as poor quality | 0 |
Sequence length | 150 |
%GC | 35 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 10809603 | 11.79266773064946 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAAAAAAAAAAAAAAAAAAA | 1895484 | 2.0678662297553725 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 878154 | 0.9580165282981019 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGAAAAAAAAAAAAAAAAAA | 862699 | 0.9411559942176931 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAAAAAAAAAAAAAAAAAAAA | 635358 | 0.6931397743293607 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA | 337220 | 0.3678880169909673 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGCAAAAAAAAAAAAAAAAAA | 161677 | 0.17638049618364457 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGAAAAAAAAAAAAAAAAA | 154126 | 0.16814278069731875 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAGAAAAAAAAAAAAAAAAAA | 152100 | 0.1659325288663962 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGGAGTTGAGTGCTGAAAAA | 141308 | 0.15415906501678311 | No Hit |
AGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGA | 130094 | 0.14192522294769855 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGGAAAAAAAAAAAAAAAAA | 121388 | 0.13242746754789023 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGCTAAACCTAGCCCCAAACC | 114624 | 0.12504832471256935 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGAGCACACGTCTGAACTC | 111732 | 0.12189331568244693 | Illumina Multiplexing PCR Primer 2.01 (100% over 22bp) |
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGAAAAAAAAAAAAAAAAA | 105398 | 0.11498327861578189 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGTAGAATCTTAGTTCAACTTT | 100965 | 0.11014712542403479 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGCAAAAAAAAAAAAAAAAAAA | 97138 | 0.10597208408299799 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGAGAAAAAAAAAAAAAAAAAAA | 96081 | 0.10481895664702309 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGCAGT | 10529755 | 0.0 | 96.935356 | 1 |
AGCAGTG | 10693475 | 0.0 | 95.335335 | 2 |
AGTGGTA | 10712405 | 0.0 | 95.18612 | 5 |
GTATCAA | 10726590 | 0.0 | 95.06295 | 9 |
GGTATCA | 10815270 | 0.0 | 94.17431 | 8 |
CAGTGGT | 10838055 | 0.0 | 94.04378 | 4 |
TGGTATC | 10895905 | 0.0 | 93.466286 | 7 |
GCAGTGG | 10903995 | 0.0 | 93.437874 | 3 |
GTGGTAT | 10913345 | 0.0 | 93.42639 | 6 |
GGTATAA | 52475 | 0.0 | 31.336466 | 8 |
GCAGTTG | 46675 | 0.0 | 30.172874 | 3 |
TGGTATA | 54725 | 0.0 | 30.139938 | 7 |
AGCAGTT | 52775 | 0.0 | 26.856075 | 2 |
CAGTTGT | 53420 | 0.0 | 26.402725 | 4 |
CATGGGG | 2525595 | 0.0 | 26.144741 | 25-29 |
ATGGGGT | 657680 | 0.0 | 26.036505 | 25-29 |
ATGGGGG | 749490 | 0.0 | 25.659756 | 25-29 |
ATGGGGA | 877800 | 0.0 | 25.001492 | 25-29 |
ATGGGGC | 350860 | 0.0 | 24.122334 | 25-29 |
TGGGGAA | 479035 | 0.0 | 24.046545 | 25-29 |