SRR6502996_2.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR6502996_2.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	80498312
Sequences flagged as poor quality	0
Sequence length	150
%GC	32

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA	5472780	6.798627032079878	No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC	1036395	1.2874742019435141	No Hit
AGATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA	840730	1.044406993279561	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	728789	0.9053469344798186	No Hit
CCATCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG	353928	0.43967133124480917	No Hit
CCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATAC	225621	0.2802804113457683	No Hit
CCATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTA	212455	0.2639247888825296	Illumina Single End PCR Primer 1 (100% over 21bp)
GTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC	179620	0.22313511369033429	No Hit
ATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACC	167307	0.20783914077602025	No Hit
GCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGA	85253	0.10590656857500318	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGCTAAC	536975	142.25937	2
GCTAACT	275835	141.52563	3
ATGAATC	217000	141.31087	2
AGTTAGC	217085	141.20247	2
TAAGGTC	231825	140.66862	2
AGGCTAA	544925	139.89142	1
GAGTTAG	219270	139.38525	1
GAACAGG	364825	139.18907	1
GATGTAC	236485	139.16014	2
CCTAATC	212480	138.96162	1
AGAGATC	144925	138.90958	2
GCTAACA	150710	138.82112	3
AGATGTA	236690	138.66959	1
CCGACAA	213465	138.39128	1
GGATTGC	194400	138.23642	2
CAGATTC	180170	137.82182	2
AGCCATG	112220	137.79831	1
CTAATCC	214515	137.5947	2
CTAAGGT	237175	137.32922	1
CGGATTG	195390	137.31491	1