FastQCFastQC Report
Mon 20 Mar 2023
SRR6502988_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6502988_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60875518
Sequences flagged as poor quality0
Sequence length150
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA55343429.091244200993904No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT8327911.368022856084773No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC7395781.2149021877727595No Hit
CCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATAC7093991.165327250274897No Hit
AGATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA5965450.9799423801206915No Hit
CCATCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG5084150.8351715380885958No Hit
GTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC3375320.554462633073611No Hit
CCATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTA3364030.5526080287316816Illumina Single End PCR Primer 1 (100% over 21bp)
CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTCCGTTGATA2036410.33452035677133785No Hit
GACAGTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACT1635040.2685874475844296No Hit
CCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGA1528120.2510237366686556No Hit
CCATGTACTCTGCGTTGATACCCATGTACTCTGCGTTGATACCACTGCTT1458130.23952650390588873No Hit
AGATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATAC1344550.2208687571249907No Hit
GTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACCACT1227720.20167713398348414No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA1170100.19221191678401817No Hit
CCATCCTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACC1166120.19155812357933447No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC1050040.17248970267489142No Hit
NCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA1045770.17178827127187649No Hit
ATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACC1032750.16964948043645395No Hit
CCATGTACTCTGCGTTGATACCACTGCTCCCATGTACTCTGCGTTGATAC945930.15538758947398196No Hit
CCATGTACTCTGCGTTTATACCACTGCTTCCCATGTACTCTGCGTTGATA864140.1419519748480826No Hit
CCATGTACTCTGCGTTGATAGCACTGCTTCCCATGTACTCTGCGTTGATA845130.13882920881264615No Hit
CCATGTACTCTGCGTTGATACCACTGTTCCCATGTACTCTGCGTTGATAC825980.1356834450262912No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC726950.11941582164442528No Hit
CCATGTACTCTGCGTTGATACCCCATGTACTCTGCGTTGATACCACTGCT722400.1186683947395733No Hit
CCATCCCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGT663720.10902905171172425No Hit
CCATGTACTCTGCGTTGATACCACTGCTTTCCCATGTACTCTGCGTTGAT618930.1016714141142914No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGGTCAG6067850.0144.247761
GGTCAGT5929300.0141.514682
TCAGTGA4524650.0141.430164
GTCAGTG5710900.0141.288093
CAGTGAC5007400.0140.99575
AGTGACT2921050.0140.479376
GTGACTG2890050.0139.04437
ATGAATC748300.0138.947482
AGATGTA1446700.0138.916141
ATAGCGA570350.0138.469041
AGTGACC1330400.0138.172456
AACTCAC871550.0137.758931
TGACTGG2756100.0137.517038
TATCAGC718850.0137.085081
TACGCAA931850.0136.463942
AGTGACG856850.0136.116096
ATTGGCT984450.0135.880071
ATCAGCA725250.0134.646822
ATGTTGC743500.0134.541212
TGACCGG1221400.0133.247048