Basic Statistics
Measure | Value |
---|---|
Filename | SRR7403970_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 96648813 |
Sequences flagged as poor quality | 0 |
Sequence length | 150 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 11541009 | 11.941180281231183 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA | 1135456 | 1.1748266375501166 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 357594 | 0.36999316277169386 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 308666 | 0.31936864035774554 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGGAATTCTGGACATTAATT | 297502 | 0.3078175414321953 | No Hit |
AGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGA | 296741 | 0.3070301546279725 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGAATTCTGGACATTAATTA | 284037 | 0.2938856579645733 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC | 234368 | 0.24249444222351701 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGTAGAATCTTAGTTCAACTTT | 153271 | 0.15858549654407034 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGCTAAACCTAGCCCCAAACC | 134254 | 0.13890910382934551 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGACTCTTCTGGTCCCCACAGA | 126944 | 0.13134563794384108 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGGAATTCTCTTGCTTCAAC | 116621 | 0.12066469973097342 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAATCTTAGTTCAACTTTAA | 104696 | 0.10832621400120042 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGCAGT | 9451575 | 0.0 | 75.06702 | 1 |
AGCAGTG | 9729780 | 0.0 | 72.927895 | 2 |
GTATCAA | 9733370 | 0.0 | 72.921646 | 9 |
AGTGGTA | 9744500 | 0.0 | 72.83052 | 5 |
GGTATCA | 9886865 | 0.0 | 71.77511 | 8 |
CAGTGGT | 9904275 | 0.0 | 71.65269 | 4 |
GTGGTAT | 10069720 | 0.0 | 70.48397 | 6 |
GCAGTGG | 10069040 | 0.0 | 70.47425 | 3 |
TGGTATC | 10077920 | 0.0 | 70.40469 | 7 |
ATGGGGG | 754260 | 0.0 | 23.571333 | 25-29 |
CATGGGG | 1924210 | 0.0 | 23.526804 | 25-29 |
ATGGGGT | 316270 | 0.0 | 23.15539 | 25-29 |
ATGGGGC | 457690 | 0.0 | 23.134583 | 25-29 |
TCGTACG | 14150 | 0.0 | 22.215307 | 50-54 |
TACGCAC | 31640 | 0.0 | 21.991026 | 50-54 |
GAAACCG | 89145 | 0.0 | 21.446924 | 85-89 |
CCTAACT | 93545 | 0.0 | 21.198257 | 60-64 |
GGAATTC | 163225 | 0.0 | 21.070353 | 30-34 |
AAACCGC | 90585 | 0.0 | 20.958149 | 85-89 |
ATTAGGG | 97120 | 0.0 | 20.856836 | 45-49 |