FastQCFastQC Report
Mon 20 Mar 2023
SRR6211802_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6211802_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences104888413
Sequences flagged as poor quality0
Sequence length151
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCACTA12769250.0143.394932
AGTCACT12789450.0143.168441
TAGCGAC3122950.0139.587112
TCACTAG3409700.0138.909583
CGCATAC3766550.0138.676681
TCACTAA6079750.0138.452683
ATAGCGA3165550.0137.708631
CAAGACT4086400.0136.72391
GCATACA3826450.0136.50582
CGAACTT2555850.0135.990661
ATGCCTA1720500.0135.290921
AGCAGGA7063900.0135.276731
GCAGGAA7086400.0134.847212
AAGACTA4215450.0132.538282
GACTGGA2703300.0132.434592
CTGGCAT1828750.0132.431761
GAACTTA2633550.0131.978412
TCACTAT3232300.0131.385563
TGCCTAA1772550.0131.318182
ACGCTTA1247950.0131.14512