FastQCFastQC Report
Sat 31 Dec 2022
SRR5849050.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5849050.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences168497
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTTCTCTGCATCTCGTATGCCGTCT30261.7958776714125473No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTTCTCTGCATCTCGTATGC22611.3418636533588135No Hit
CTTATACACATCTCCGAGCCCACGAGACTTCTCTGCATCCTGTCTCTTATAC3210.19050784286960598No Hit
CGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACTTCTCTGCATCTCGT2650.15727282978331958No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACTTCTCTGC2190.12997264046244147No Hit
AAGCCCTGTCTCTTATACACATCTCCGAGCCCACGAGACTTCTCTGCATCTC1770.10504638064772667No Hit
ACCAAGGGAATTCCACAAGCCCCTGGTGAAGGAAGGCGGTGACCGCCCTCGG1710.10148548638848169No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTTCTCTGCATCCTGTCTCT1700.10089200401194086No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)