FastQCFastQC Report
Sat 31 Dec 2022
SRR5847761.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847761.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences140121
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACAGTCCACCATCTCGTATGCCGTCT8030.573076127061611No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGTCCACCATCTCGTATGC7600.542388364342247No Hit
CTTATACACATCTCCGAGCCCACGAGACAGTCCACCACTGTCTCTTATACAC3640.25977547976391835No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGTCCACCACTGTCTCTTA3360.23979275055130922No Hit
AGCTACGATGGGGGTTTACAGGAAAGCTATCTGGTTTTATTTCCCTAATCCA1800.12846040208105852No Hit
GCCACCGGGTGGTTTTAAAAGAGGTAAATGTATCCATAGACCACAGTGCCTT1800.12846040208105852No Hit
CTTCGAGGGGAATAAATCAGAAACTGGTAAGATTTGTTGTATTTTCATAAAA1710.12203738197700559No Hit
GGTTCAGGGAAGTTCTTAGAGACAGACAAAGAAACTCAGACTCCCACACAAT1580.11275968627115136No Hit
ATTTGGGGGGCAGAGAGTATAATGAAGAATCTTAGGCGGGTGCACCCAGTTT1570.11204601737070104No Hit
TTTGCGGGATTCTGAGGGGCCACAGTAATTACAAACTTACTATCCGCCATCC1550.11061867956980038No Hit
GCATACGGTGAACAAGTAACACAATACAGAAAATGCTGATATGAATACTTAG1550.11061867956980038No Hit
TCATAAGGGGGCACAGTAAGGGAAGAAGGTGATGGATTTGTGGGAACAAGTA1530.10919134176889975No Hit
AACGCTGGGAAGGGAGAGAATCCAAGCCTAAAATTAAATAAATCTTTCAGCC1530.10919134176889975No Hit
CAGCTGCAAAAAAGCATATTTTCTGTGTTTCTGGACTGCACTGTTGTCCTTG1510.10776400396799908No Hit
GACCATGGGATTGGAAGCCTGTCTTCTTACTATTAGTTTTGAGCTTAGTTTT1510.10776400396799908No Hit
CGCTCAGGGTAGCTGGGTATATTTGAGAAGTAGCCACTTGGAGGCAGCTTTT1490.10633666616709843No Hit
GCACCGGGGGTAAATTTTGGTGATGTTGTGACCAGAAATATGACATAGGAAC1480.10562299726664812No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACAGTCCACC1450.10348199056529714No Hit
AACGCTGGGTACAACGTGACCCTCTTCCACGTCATCCGCTCCGACGAGTTGT1440.10276832166484683No Hit
AACATCGGGGATCTAACGCAGGGACTCAGCTCCCATCTCCTTTCAGAAAAAT1440.10276832166484683No Hit
GCAGGCGGGTGAGAAGGCAGCTGGCCTGACCAGACAGTCCACTCCAGGCTAC1430.10205465276439647No Hit
CTTCGCGGGTAAGTTCAAAAAATAAGAGCAAAATCTCCAAAAAGAAAAAAAG1410.10062731496349583No Hit
ACCAATGGGGTATCTCTTGGTATTTTTAATAGCTTCTGGGAGAATTCTGGCT1410.10062731496349583No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)