FastQCFastQC Report
Sat 31 Dec 2022
SRR5847706.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847706.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences74512
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGTCCACCATCTCGTATGC8501.1407558514064848No Hit
CTTATACACATCTCCGAGCCCACGAGACAGTCCACCATCTCGTATGCCGTCT7841.05217951470904No Hit
CTTATACACATCTCCGAGCCCACGAGACAGTCCACCACTGTCTCTTATACAC3370.4522761434399828No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGTCCACCACTGTCTCTTA2830.3798045952329826No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACAGTCCACC1680.2254670388662229No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACAGTCCACCA1250.16775821344213013No Hit
TGTTTTGGGATGGGACACAGCAAAAGCAGTACTGAGGGAATTTTATAGCTAT1210.16238995061198197No Hit
AAGCTAGGGAATTAAGTTTGTCATCTTCTATGGGCACAGTTAATGGCACTCC1190.15970581919690788No Hit
AACTTAGGGCTCCGCCCTTGGCTGAGACTGGCGCTCCTCGCCGCTTCCGGCG1170.15702168778183379No Hit
GGATAAGGGAGGTCCAACGCATAGTCACTGTTTTCACTAACAAATACTCTAA1130.15165342495168563No Hit
TCTCATGGGGATCTTTTCAAGTTTTTGTCTCATGGTATTTTTTCCTCAATGC1100.1476272278290745No Hit
CCAGGGGGAGGCGGGTGGATTAATTATTCAGCATCCTCTCCCTTTGTAACTA1060.14225896499892635No Hit
TTAAAAGGGGTACCCTCTGCCTCTACAGTATTATGACATTTCCTAATAAAAC1050.1409168992913893No Hit
CGTACAGGAACTCAGGATTAAGAAACTCACTCAAATCCACACAACTACATGG1040.13957483358385225No Hit
TAAACAGGGAAGTAACATGAAAACATTCTCCTCCGCATAAGCCTGCGTCAGA1030.13823276787631522No Hit
TTAATCGGGCTAGCTGCTGGCATCACTATACTACTAACAGACCGCAACCTCA1020.1368907021687782No Hit
TCGCCTGGGTGCTCAAGGTCAGTGTCATCTTTGTGTTTAGCTCATCCAAAGG1020.1368907021687782No Hit
CAACCAGGGACTGAGAAGGGCCTGGTAACTGTGACATCCCAATAAATCTGAA1020.1368907021687782No Hit
AGACATGGGAGATGGAAAAATTCTCAAGAAAAATAGTATTTTGTAGTAATTA1010.13554863646124113No Hit
TACTTAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1000.1342065707537041No Hit
ATGCTGGGGCAGGAGAGTTGCTTGAGCTCGGGGGGCGGAGGTTGCGTTGAGC1000.1342065707537041No Hit
CCTAAGGGGTAATCGCTTGAAGAACTTAAACCTTCTGGATGAATGATTTCTA1000.1342065707537041No Hit
TGCAGTGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC990.13286450504616706No Hit
ACTTTGGGGGTGTTATATTTACAAGTATTTTGAATTCCCTGTTACACATTTT990.13286450504616706No Hit
TGAAAGGGGACCGGAAAAATCATTGATGTATTTGTGATCCTTAATAATGACT990.13286450504616706No Hit
GGTACTGGGTGGGAGGTAATTGAATCATGGGGGTGGTTACCTCCATGCTATT990.13286450504616706No Hit
CTGATAGGGCTGTTGAATTGCCCCTGGGCCTGCCCCCGGCCCCATTTGTGCC980.13152243933863No Hit
CTTGCTGGGAAGGGAAGGAAAAATGTAAGGTTTAACAGTAAGCACTTGCATT970.13018037363109297No Hit
AGACAAGGGACATCTACCACACCCTGGGCTGTTTGTCAAACATGCCTGGTTT960.12883830792355594No Hit
GAAGGGCGATCTATGTCGGGAAGACAAGTTTCCCAACAGCTAGGCTAAGAAC960.12883830792355594No Hit
GTAACCGGGGCTTTTCATCTAAGTTACTAAGGTTCTTGTAGCTAAGATTGTA960.12883830792355594No Hit
CTGTGAGGGCATAAGGAACCATGCTGTAACCTATGGTAGCAGCAGCTGGGCT940.12615417650848185No Hit
GTGCCTGGGACATACCCATGGCCAACCTCCTACTCCTCATTGTACCCATTCT940.12615417650848185No Hit
TGAACTGGGGTGAACAGCCGTTAAAATCCCAGTTGATTTCTGCAGTTACGGG940.12615417650848185No Hit
AACGGTGGGTGAGATTTGATGGAGCCCTGAATGTTGACCTGACAGAATTCCA930.12481211080094481No Hit
GCTCCAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA930.12481211080094481No Hit
ACGCATGGGCGCTCACCGCATCGTGGCACCTGGCAAGGGCATCCTGGCTGCA930.12481211080094481No Hit
AACCGCGGGCATAACATCCACAGGACTCTATGTTTGCAAAAGCCAGCTTAGC920.12347004509340777No Hit
GTTCAGGGAGCAAGAACTTGAGAGAAAAACACATCTGTCTCTGCAATGCAAA920.12347004509340777No Hit
TAATTGGGGAGAGCAATCAACAGAAATGTACAGGCATGACTAAACTTTGGCT910.12212797938587074No Hit
ACGCCGGATTTAAAACAGTATGGAAATACGTAATGTGTGAAGTGAAAATGCA900.1207859136783337No Hit
AATTATGGGTAACAGACAAGAAACCAGGACATGTGCCATAACACATACATTA890.11944384797079664No Hit
TCGCATGGGAAGGCTTATATAAAGATCTATCAAGGTGAAGAATTACCACATC890.11944384797079664No Hit
GCACGAGGGCTTAGCTCGGGCTCTAACAATTTCTACAGATCAGGAATTCAAG880.11810178226325961No Hit
AAAAAAGGGCCTTTGAAGGATGCCCTGTGTAGATTATTCAGTGCCACAAATT880.11810178226325961No Hit
CAAACCGGGTACCTCGTGGGCAGATGATAACATGTTTTGGATGCTGTCAGTG880.11810178226325961No Hit
GTTTTAGGGTCTTGAGGTGGGTACTAACAGACCGCAACCTCAACACCACCTT880.11810178226325961No Hit
GCAACTGGGCTACAACACAAAAGGCAAAAAATTCTGCTTGTTTTCATTGAAG880.11810178226325961No Hit
GCATTTGGGGAAACTCTTAGTATGTGGTATATGGCAAATGACATATAAATGT870.11675971655572258No Hit
GCTAGAGGGCATTTATTTCTTTACATTTTGATTTCAATGGAAAGCAATACCA860.11541765084818552No Hit
TTGCTTGGGTACCTGTGCCAGAGAGCTAGAAAGAAGGTCATAAAGGGTTAAA860.11541765084818552No Hit
TTCACGGGAGGCCCCTGAGGAGCGATGACGGAATATAAGCTGGTGGTGGTGG850.11407558514064849No Hit
ACTCGTGGGAGGTATGGTCTGAGCTATGATATCAATTGGCTTCCTAGGGTTT850.11407558514064849No Hit
TCTATAGGGAGAACAGTAAATTCTTTCCCGAAGGTTTTCAGTTTACTTTGCC850.11407558514064849No Hit
CGGCCTCCCAAAAAGTGCTAGGATTACAGGCATGAGCTGCCGTGCCTGGCCG850.11407558514064849No Hit
ACTACCGGGATGCCTTTCAGTTACTTAAAAGAAAAACTCAAATTAATAATAG850.11407558514064849No Hit
TTGTTTGGGCTCCACATTTTTGTGCATGTGAAGTGGCTGTCTCATCGTGGTG840.11273351943311145No Hit
AAGTTGGGAGGTGGCTAAAGAGGGGAGCTCTAAAATCACTGCTCTGAGAAAC840.11273351943311145No Hit
CAAGCAGGAATTAAAGTTGGATAGAGAAACAGACACATGTGATGAAGCAAAT840.11273351943311145No Hit
AATAGCGGGTGAGGGTTTTTGTAAGCCTCATTATAACCACAAAAGAAAAACC830.1113914537255744No Hit
CCGGTGGGGGCCTTTGACTTGATCTTTTTCCATTCTCTTAAATGTAGTCAAT830.1113914537255744No Hit
TACAGTGGGGGGATTACAGGTGTGAGCCACCATGCCTGGGCTAAACTCTTTA830.1113914537255744No Hit
ACCTAGGGGACGGGATAGCATTCATGAAGTGAATGGAAAGTTGGAAAGTCTC830.1113914537255744No Hit
AGAAAGGGGCTATGTGAATACAACAATCTTTTACACAATTAAAATAGGATTA830.1113914537255744No Hit
TTCGAGGGGACCATCCCCCAGCTGGGCATTATGAGAAAAGCAAGATGACTAT820.11004938801803736No Hit
TGTAAATGGGAAGGCTGTGATCTTCTTCATACCAAACCCAAGTCTTATTTTT820.11004938801803736No Hit
CCTCTTGGGTGAGAAATAGTGTTTGCCCTAAACCTTTGGGAAAAAAATACAG820.11004938801803736No Hit
TTAAATGGGCACCAGCACTGGGTTTTTGTTTTTTGTTTGTTTTTCCGCTTAA820.11004938801803736No Hit
ATTGCCAGGGGTCAGGACTTGTTCATTAGGTTGGCAGCAGAGGGGCAGAAGG820.11004938801803736No Hit
CAAGTTGGGATACATTCTTTAGGAAAAGACCAGTGCCCTCAGTCTGAGCAAC820.11004938801803736No Hit
TTAAGCGGGGGTTTTAATTCTTGGGACTCGGCTAGTATCTCTTAATAGCTTC820.11004938801803736No Hit
ATGCACGGGACTGCAACCTCTCGGATTCAAGGGATTTTCCTGTCTCAGCCTC810.10870732231050033No Hit
TATACTGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA810.10870732231050033No Hit
ATGCTTGGGAGGAACCCAGGAGCCACGGCCTGCTGTTGCTTCAGCCTGGCCT810.10870732231050033No Hit
GCGTTTGGGGAGGGAGGAGTGGGGCCACAGAGAGAGGGCCCATTAGTTGCAG810.10870732231050033No Hit
TAGTCAGGGAATCCATTTTGAGTTAATTTTTGTATATGGTGTGAGATAAAGG800.1073652566029633No Hit
AGCGCAGGGCTATACAAATACAGAAAACAGAATAAATAAATAATTTCATTAA800.1073652566029633No Hit
GTTTGAGGGAGAAGCTCTCCGGGCCCTCAGGGGCTTAGATCCCACTTGAGTC800.1073652566029633No Hit
TCTTTCGGGGGTTCTTCGCCGAGAGTCGTCGGGGTTTCCTGCTTCAACAGTG800.1073652566029633No Hit
ATCTTAGGGGAGGGACACCCCAGGGACCCATCAGACTCACGACACAGAGAAA800.1073652566029633No Hit
CTGGCAGGGCTACTCTATGAAATTTGCTTTCTTGGTAACCTAATATATGATC800.1073652566029633No Hit
ATTAGCGGGATATTAAAGAAACTACAAGTGATGATGTAAGTGCTGCTAACAC800.1073652566029633No Hit
GCAGAAGGGGTGCTGATCTGGACCATCTTTGTCTTGCCTTTTCACGGTAGTG800.1073652566029633No Hit
TGTGCAGGGGTGCTCACTATGACTACCTATTTCAAATAGGCTTTCAATTTTT800.1073652566029633No Hit
CCTTACGGGGTGATGCCACTAGTCAGAATGCCTTGGAAAAGAGCTGTAGTTC790.10602319089542624No Hit
AACTCAGGGCGGCATTGGTGTGGTGATCAAGATCGGATCTGCGAACTCTGGT790.10602319089542624No Hit
GACAAGGGGTTGATGGAGCAGGTAAACTAGCAGCTAATGCAATAAAAATAGA790.10602319089542624No Hit
AAGCCTGGGTCCCCAAAGATTTCTTTACCAGTTGTTTTTAACTATGAATCTT790.10602319089542624No Hit
CTTACAGAGGGGTGCAACATACAGGTAGGTCTTCAGCATAAGCTGAAATATA780.1046811251878892No Hit
GCACCAGGGGATGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGC780.1046811251878892No Hit
TTTGCGGGGATTGTGATTTTGTCTTCCTTAAAGATTGGAATATGAATAAAAA780.1046811251878892No Hit
CACAAATGGCTGCCAAACTGGAACGTTTGCGAGAGAAGGATAAGCACATTGA780.1046811251878892No Hit
TTAGCCGGGAGGCTATAAAGAGACATTTAGCACTTTTTTCTATTTAAAGGAA780.1046811251878892No Hit
GGCGGTGGGGGCGGAAGGCTGGGAGGGCTGCGCGGGCTGCGCGTCGCCATGG780.1046811251878892No Hit
AGTAAAGGGGAAATCACAAAAGAGCATAGCGGTTATATCAGACCAAATAGAT780.1046811251878892No Hit
GTATATGGGATGGCAACTTGGCAACTGCATGAGCTCGTACTAATTATGTTTC780.1046811251878892No Hit
AGGTTGGGGCATCAGCTTGTCTGCAGGGGATTTCTGGAGGTTTGGGGGCTTG780.1046811251878892No Hit
AGCTAAGGGTCGTGCGGAGGCAGAGGCGGGATCTTCCGGAGGTGAGAATTGT780.1046811251878892No Hit
AAAGCCGGGAGTTTTACCAATAATCTTAAATCTTAAAAAGATTAAGATAATC780.1046811251878892No Hit
GAGTAAGGGCGAGTACTATTTAGAACAAAGAAGAAACTCTTTCCCTGGTTAG770.10333905948035217No Hit
TATGAGGGGGGCGCAGGCGCAAGCCGGCAAGATGGCGGCGGCTGGGGCTGGC770.10333905948035217No Hit
AGACGGGGGTCTTTCCGCGGGGTTGGTAACTGAGGTATAAAATAACCAAAGC770.10333905948035217No Hit
GCCATGGGGTCAGAACAAATGCAAGCCAGCACCAGCACACCACTGCCTCTTC770.10333905948035217No Hit
ATGTTGGGCATGGAGACCTCTTGAGGTGGAGACGGGCGTTAAACCCTTCTCA770.10333905948035217No Hit
TTCGCAGGGATCTCCAGATTATCATCTCCTTGCTATTCCTGCCCTCTTCTAA760.10199699377281511No Hit
TTTTGGGGATACTGGCATGAAACACTTTGAATGTAAGGAGTGTAAAAAAACC760.10199699377281511No Hit
TGCTCTGGGTATTCCAAATAAAACTTGTATCTTCAGGCTTATGTTACTTGTG760.10199699377281511No Hit
AACTGTGGGCTGGTTTGTAACTTGATGCTGTTTAGTTAAATTGCTAGTTTTC760.10199699377281511No Hit
ACGTCGGGGTCCTTAGCGCCTGTCTGCTCTCCTCTAACTAGGACCCAGGGCC760.10199699377281511No Hit
GTGCTGGGATTACAGGTGTGAGCCACCATGCCTGGGCTAAACTCTTTAAGTC760.10199699377281511No Hit
AGAATAGGGGGAAGGTGCTGTAAAGAGTCACAGCAGTTGCAGCCCTGAGAAG760.10199699377281511No Hit
TGCTTAGGGGATATCATTGATGAACTTGACAAGAGCAGTTTCTATGGAGAGC760.10199699377281511No Hit
GCAAAGGGGCGGGGAACGGGCGCGGGCCGCGCCACAGCCGGAGCGGGGCAGG760.10199699377281511No Hit
ACAGTGGGGGGGAAGTGCATGAGCTGCCGATGTGGTGCTTAGTGATTGCGGT750.10065492806527808No Hit
ACCGTAGGGAAATAATTGATACTTGTCTACGTAATACATTTTACTGTATGTT750.10065492806527808No Hit
CACTAGGGGAGAGGCCGGCTTGGTCACTATGGAGGAGATAGGCATCTTGGTG750.10065492806527808No Hit
ACTGACGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC750.10065492806527808No Hit
TCGAGCGGGTCTCATTTAAGATTCTCTTTTCATATTGTCCATATTATAAATG750.10065492806527808No Hit
AGTAGTGGGCAAAGTTTCCAAATTCTAATGTGTGCTTGAAAATTCAAATTTT750.10065492806527808No Hit
CTCACGGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC750.10065492806527808No Hit
GCCTCCAGCACATGCACTAAAATTTAAACTCCATGCCTGGACAAAATCAATG750.10065492806527808No Hit
GATGTGGGTCTGTGGGGGTGATGAATGCTGGTCAAGGGGCCAAGGTGGAAAA750.10065492806527808No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)